Variant report

Variant	rs56182336
Chromosome Location	chr3:50713276-50713277
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:50712677..50713421-chr3:50922505..50923533,3	MCF-7	breast:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398465	chr3:50710948-50713996	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50711400-50714000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:50711400-50714400	Active TSS	Brain Angular Gyrus	brain
3	chr3:50711400-50714400	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr3:50711600-50713800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr3:50711800-50713400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:50711800-50714400	Active TSS	HSMMtube	muscle
7	chr3:50712000-50713400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:50712000-50713400	Active TSS	Fetal Brain Female	brain
9	chr3:50712000-50713600	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr3:50712000-50713600	Active TSS	Brain Substantia Nigra	brain
11	chr3:50712000-50713600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr3:50712000-50713800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:50712000-50714000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr3:50712000-50714400	Active TSS	Brain Anterior Caudate	brain
15	chr3:50712200-50713400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:50712200-50713400	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr3:50712200-50713400	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr3:50712200-50713400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:50712200-50713400	Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr3:50712200-50713400	Bivalent Enhancer	Liver	Liver
21	chr3:50712200-50713400	Active TSS	Brain Germinal Matrix	brain
22	chr3:50712200-50713400	Active TSS	Right Atrium	heart
23	chr3:50712200-50713600	Active TSS	Stomach Smooth Muscle	stomach
24	chr3:50712200-50713800	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr3:50712200-50713800	Active TSS	Brain Cingulate Gyrus	brain
26	chr3:50712200-50714000	Active TSS	H1 Cell Line	embryonic stem cell
27	chr3:50712200-50714000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr3:50712200-50714000	Active TSS	Brain Hippocampus Middle	brain
29	chr3:50712200-50714200	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr3:50712200-50714400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:50712400-50713400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr3:50713000-50713400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
33	chr3:50713000-50713600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
34	chr3:50713000-50714000	Active TSS	Fetal Brain Male	brain
35	chr3:50713200-50713400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr3:50713200-50713400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:50713200-50713400	Bivalent/Poised TSS	Primary B cells from cord blood	blood
38	chr3:50713200-50713400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
39	chr3:50713200-50713400	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
40	chr3:50713200-50713400	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr3:50713200-50713400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:50713200-50713400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:50713200-50713400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
44	chr3:50713200-50713400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
45	chr3:50713200-50713600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr3:50713200-50713800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
47	chr3:50713200-50714000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr3:50713200-50714400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr3:50713200-50715200	Enhancers	HSMM	muscle
50	chr3:50713200-50727600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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