Variant report

Variant	rs561835010
Chromosome Location	chr9:84549029-84549030
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr9:84548279-84549034	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000230846	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv508555	chr9:84507699-84580028	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1820579	chr9:84518394-84556369	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1849322	chr9:84518394-84564267	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv1800180	chr9:84519751-84557638	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv17765	chr9:84527569-84566607	Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1849425	chr9:84530608-84564471	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1844930	chr9:84530608-84566456	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv1849238	chr9:84530808-84569326	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv8536	chr9:84531004-84564299	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv1797769	chr9:84531600-84563570	Inactive region	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv1798623	chr9:84531600-84564471	Inactive region	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv1795281	chr9:84531800-84562801	Inactive region	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv1800459	chr9:84531800-84564271	Inactive region	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv1802939	chr9:84532252-84562125	Inactive region	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv3411940	chr9:84536915-84552096	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv973847	chr9:84542907-84550997	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
18	esv1851025	chr9:84542993-84566733	Inactive region	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
19	esv1794087	chr9:84544328-84563021	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
20	esv3332258	chr9:84544639-84549038	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv3351946	chr9:84546844-84549434	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
22	nsv6584	chr9:84547871-84606452	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links