Variant report

Variant	rs561841346
Chromosome Location	chr3:52931219-52931220
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3339338	chr3:52930462-52933260	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52929800-52931400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:52929800-52932200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:52929800-52932200	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr3:52930000-52931400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr3:52930000-52931400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr3:52930000-52932000	Active TSS	H9 Cell Line	embryonic stem cell
7	chr3:52930000-52932200	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr3:52930000-52932200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:52930200-52931400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr3:52930200-52931400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:52930200-52932000	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr3:52930200-52932000	Active TSS	Right Atrium	heart
13	chr3:52930200-52932200	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr3:52930200-52932200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:52930200-52932200	Active TSS	GM12878-XiMat	blood
16	chr3:52930400-52931400	Flanking Active TSS	Brain Germinal Matrix	brain
17	chr3:52930400-52931800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:52930400-52931800	Active TSS	HepG2	liver
19	chr3:52930400-52932000	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr3:52930400-52932000	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr3:52930400-52932000	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr3:52930400-52932000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:52930400-52932000	Active TSS	Aorta	Aorta
24	chr3:52930400-52932200	Active TSS	H1 Cell Line	embryonic stem cell
25	chr3:52930400-52932200	Active TSS	Fetal Kidney	kidney
26	chr3:52930400-52932200	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr3:52930400-52932200	Active TSS	Ovary	ovary
28	chr3:52930600-52931400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
29	chr3:52930600-52931400	Flanking Active TSS	Liver	Liver
30	chr3:52930600-52931800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:52930600-52931800	Active TSS	HSMMtube	muscle
32	chr3:52930600-52932000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr3:52930600-52932000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr3:52930600-52932000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr3:52930600-52932000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr3:52930600-52932000	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr3:52930800-52931400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
38	chr3:52930800-52931800	Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr3:52930800-52931800	Active TSS	Muscle Satellite Cultured Cells	--
40	chr3:52930800-52931800	Active TSS	Rectal Smooth Muscle	rectum
41	chr3:52930800-52931800	Active TSS	Stomach Mucosa	stomach
42	chr3:52930800-52931800	Active TSS	HMEC	breast
43	chr3:52930800-52932000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:52930800-52932000	Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr3:52930800-52932000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr3:52930800-52932000	Active TSS	Esophagus	oesophagus
47	chr3:52930800-52932000	Active TSS	A549	lung
48	chr3:52930800-52932200	Active TSS	NHLF	lung
49	chr3:52931000-52931600	Active TSS	Gastric	stomach
50	chr3:52931000-52931800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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