The 2.0 version of rSNPBase

Variant report

Variant rs56184211
Chromosome Location chr6:80855925-80855926
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:80818000-80861400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr6:80818000-80866000 Weak transcription Primary T helper cells PMA-I stimulated --
3 chr6:80836400-80863000 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr6:80836400-80891200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr6:80837000-80895200 Weak transcription Fetal Intestine Small intestine
6 chr6:80838600-80857400 Weak transcription Primary hematopoietic stem cells blood
7 chr6:80838600-80873200 Weak transcription HUES6 Cell Line embryonic stem cell
8 chr6:80839200-80873200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr6:80839200-80889600 Weak transcription Lung lung
10 chr6:80839600-80857600 Weak transcription Fetal Muscle Trunk muscle
11 chr6:80839600-80859600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr6:80840000-80860800 Weak transcription Fetal Intestine Large intestine
13 chr6:80841000-80859200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr6:80841000-80860800 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr6:80841200-80861400 Weak transcription HUES64 Cell Line embryonic stem cell
16 chr6:80841200-80895800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr6:80841400-80873400 Weak transcription Primary B cells from peripheral blood blood
18 chr6:80842200-80914200 Weak transcription Primary B cells from cord blood blood
19 chr6:80843400-80857400 Weak transcription Dnd41 blood
20 chr6:80844200-80861400 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr6:80844200-80873200 Weak transcription HUES48 Cell Line embryonic stem cell
22 chr6:80846400-80861400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr6:80847800-80860200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr6:80851400-80859600 Weak transcription Primary T killer naive cells fromperipheralblood blood
25 chr6:80851600-80858400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr6:80852200-80856000 Enhancers Fetal Heart heart
27 chr6:80853000-80860600 Weak transcription Brain Cingulate Gyrus brain
28 chr6:80853400-80856000 Enhancers Stomach Smooth Muscle stomach
29 chr6:80853400-80877200 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr6:80853600-80856000 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr6:80853600-80856400 Weak transcription Brain Anterior Caudate brain
32 chr6:80853600-80856800 Weak transcription Duodenum Mucosa Duodenum
33 chr6:80853600-80858600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr6:80853600-80862400 Weak transcription Psoas Muscle Psoas
35 chr6:80853600-80862600 Weak transcription Pancreas Pancrea
36 chr6:80853600-80873400 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr6:80853800-80856400 Enhancers Osteobl bone
38 chr6:80853800-80859000 Weak transcription Skeletal Muscle Female skeletal muscle
39 chr6:80853800-80891800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr6:80854000-80856000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr6:80854000-80856000 Enhancers Muscle Satellite Cultured Cells --
42 chr6:80854000-80858000 Weak transcription NHEK skin
43 chr6:80854000-80859600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr6:80854200-80858200 Strong transcription Liver Liver
45 chr6:80854400-80857400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr6:80854400-80858600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr6:80854400-80860400 Weak transcription Rectal Mucosa Donor 31 rectum
48 chr6:80854600-80858200 Strong transcription Primary T cells from cord blood blood
49 chr6:80854600-80858800 Weak transcription Brain Substantia Nigra brain
50 chr6:80854800-80860200 Weak transcription Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015