Variant report

Variant	rs561852934
Chromosome Location	chr5:16711008-16711009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16710425..16712025-chr5:16715112..16717325,2	MCF-7	breast:
2	chr5:16710355..16712259-chr5:16729265..16730891,2	MCF-7	breast:
3	chr5:16710511..16712178-chr5:16712556..16714357,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145555	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869660	chr5:16651289-16766428	Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv880373	chr5:16710572-16785604	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16663000-16712400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:16663800-16713400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:16673800-16713400	Weak transcription	Psoas Muscle	Psoas
4	chr5:16675800-16713600	Weak transcription	Left Ventricle	heart
5	chr5:16681600-16713200	Weak transcription	Small Intestine	intestine
6	chr5:16682400-16736000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:16688000-16711600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:16688400-16711400	Strong transcription	Fetal Lung	lung
9	chr5:16690200-16713200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr5:16697200-16711600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:16697400-16711200	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr5:16697400-16711400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:16697800-16711400	Strong transcription	HMEC	breast
14	chr5:16698000-16711400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:16698000-16711400	Strong transcription	Osteobl	bone
16	chr5:16698200-16711400	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr5:16699000-16711400	Strong transcription	Ovary	ovary
18	chr5:16699000-16711400	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:16699200-16711400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:16701400-16711200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:16701800-16711600	Strong transcription	Fetal Intestine Large	intestine
22	chr5:16701800-16713400	Weak transcription	Right Ventricle	heart
23	chr5:16702000-16711400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr5:16702600-16711400	Strong transcription	Duodenum Mucosa	Duodenum
25	chr5:16702600-16711600	Strong transcription	HSMM	muscle
26	chr5:16703600-16711200	Strong transcription	Fetal Brain Female	brain
27	chr5:16703800-16711600	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:16704200-16711600	Strong transcription	NHLF	lung
29	chr5:16704400-16711600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr5:16704600-16711600	Strong transcription	NH-A	brain
31	chr5:16704800-16711200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:16704800-16711400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
33	chr5:16705000-16711800	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr5:16705000-16712400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr5:16705200-16713400	Weak transcription	Colon Smooth Muscle	Colon
36	chr5:16705400-16711400	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr5:16705400-16711600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr5:16705600-16711600	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr5:16705600-16712200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr5:16705800-16711400	Strong transcription	Fetal Muscle Trunk	muscle
41	chr5:16705800-16711400	Strong transcription	Fetal Stomach	stomach
42	chr5:16705800-16711800	Strong transcription	Fetal Intestine Small	intestine
43	chr5:16706600-16711400	Strong transcription	HSMMtube	muscle
44	chr5:16706800-16711600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
45	chr5:16706800-16711600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr5:16706800-16711600	Strong transcription	HUVEC	blood vessel
47	chr5:16707000-16711200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr5:16707000-16711200	Strong transcription	Adipose Nuclei	Adipose
49	chr5:16707000-16711400	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr5:16707000-16711400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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