Variant report

Variant	rs56186021
Chromosome Location	chr19:21771320-21771321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10412012	0.85[AFR][1000 genomes]
rs12609183	0.93[AFR][1000 genomes]
rs1401925	1.00[AFR][1000 genomes]
rs1809908	0.93[AFR][1000 genomes]
rs1879233	0.86[AFR][1000 genomes]
rs1879236	0.93[AFR][1000 genomes]
rs2650828	0.93[AFR][1000 genomes]
rs2650833	0.85[AFR][1000 genomes]
rs4808280	0.93[AFR][1000 genomes]
rs4809136	0.85[AFR][1000 genomes]
rs7247918	0.85[AFR][1000 genomes]
rs7252393	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv833782	chr19:21663537-21845722	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1059328	chr19:21691123-21775948	Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1056332	chr19:21746555-21807647	ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv543947	chr19:21749857-21772586	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	nsv911422	chr19:21752009-21973929	ZNF genes & repeats Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv543948	chr19:21763457-21775948	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv960938	chr19:21766627-21785276	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21769600-21771400	ZNF genes & repeats	Lung	lung
2	chr19:21770000-21786600	Weak transcription	Primary T cells from cord blood	blood
3	chr19:21770200-21773200	Weak transcription	Placenta	Placenta
4	chr19:21770200-21786600	Weak transcription	Right Ventricle	heart
5	chr19:21770400-21773600	Weak transcription	Adipose Nuclei	Adipose
6	chr19:21770600-21771400	Enhancers	Fetal Intestine Large	intestine
7	chr19:21770600-21772000	Weak transcription	Ovary	ovary
8	chr19:21770600-21772400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:21770600-21773400	Weak transcription	Fetal Heart	heart
10	chr19:21770800-21771400	Enhancers	Fetal Intestine Small	intestine
11	chr19:21771000-21776400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr19:21771000-21786200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr19:21771200-21771400	Genic enhancers	Dnd41	blood
14	chr19:21771200-21771800	Weak transcription	Gastric	stomach
15	chr19:21771200-21772600	Enhancers	Pancreas	Pancrea
16	chr19:21771200-21775200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr19:21771200-21775400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr19:21771200-21786200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr19:21771200-21786200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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