Variant report

Variant	rs561901864
Chromosome Location	chr15:62360241-62360242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:62352114..62355489-chr15:62359291..62363476,4	MCF-7	breast:
2	chr15:62160043..62163025-chr15:62359293..62361455,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259251	Chromatin interaction
ENSG00000129003	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457176	chr15:62178695-62519658	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv569643	chr15:62178695-62519658	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv471247	chr15:62202481-62519658	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv569646	chr15:62202482-62519658	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1044748	chr15:62276183-62521856	Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv542405	chr15:62276183-62521856	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv457178	chr15:62340126-62394324	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv569652	chr15:62340126-62394324	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv1560	chr15:62354264-62399304	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	esv3341159	chr15:62359285-62361833	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3358286	chr15:62359310-62361608	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62357200-62360400	Weak transcription	Hela-S3	cervix
2	chr15:62358600-62361000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr15:62358800-62360800	Active TSS	Esophagus	oesophagus
4	chr15:62358800-62360800	Active TSS	Gastric	stomach
5	chr15:62358800-62360800	Flanking Active TSS	HMEC	breast
6	chr15:62358800-62361000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:62358800-62361000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:62358800-62361000	Active TSS	Aorta	Aorta
9	chr15:62358800-62361000	Active TSS	Pancreas	Pancrea
10	chr15:62358800-62361200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:62358800-62361200	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr15:62358800-62361400	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr15:62359000-62361000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr15:62359000-62361000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr15:62359000-62361000	Active TSS	Brain Angular Gyrus	brain
16	chr15:62359000-62361200	Active TSS	Right Ventricle	heart
17	chr15:62359400-62361000	Active TSS	Ovary	ovary
18	chr15:62359400-62361200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
19	chr15:62359400-62361400	Active TSS	Psoas Muscle	Psoas
20	chr15:62359600-62360800	Bivalent Enhancer	Fetal Brain Male	brain
21	chr15:62359600-62361000	Active TSS	Brain Hippocampus Middle	brain
22	chr15:62359600-62361000	Active TSS	Brain Substantia Nigra	brain
23	chr15:62359600-62361000	Active TSS	Right Atrium	heart
24	chr15:62359800-62360800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:62359800-62360800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:62359800-62360800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:62359800-62360800	Active TSS	Brain Anterior Caudate	brain
28	chr15:62359800-62360800	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr15:62359800-62360800	Active TSS	Small Intestine	intestine
30	chr15:62359800-62361000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:62359800-62361000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:62359800-62361000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr15:62359800-62361000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
34	chr15:62359800-62361000	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr15:62359800-62361000	Bivalent/Poised TSS	A549	lung
36	chr15:62359800-62361000	Active TSS	HSMMtube	muscle
37	chr15:62359800-62361200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:62359800-62361200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
39	chr15:62359800-62361200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:62359800-62361200	Bivalent/Poised TSS	Fetal Brain Female	brain
41	chr15:62359800-62361200	Bivalent/Poised TSS	Osteobl	bone
42	chr15:62360000-62360400	Active TSS	Placenta Amnion	Placenta Amnion
43	chr15:62360000-62360600	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:62360000-62360600	Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr15:62360000-62360600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr15:62360000-62360600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:62360000-62360600	Active TSS	HepG2	liver
48	chr15:62360000-62360600	Active TSS	HUVEC	blood vessel
49	chr15:62360000-62360600	Bivalent/Poised TSS	NH-A	brain
50	chr15:62360000-62360800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast

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