Variant report

Variant	rs561905069
Chromosome Location	chr10:118894561-118894562
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118889635..118891838-chr10:118894016..118895689,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv825577	chr10:118887637-118905958	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3386796	chr10:118893062-118895160	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118890400-118899000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:118890600-118894600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr10:118890600-118894800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
4	chr10:118890800-118894600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr10:118890800-118894600	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr10:118890800-118894600	Bivalent Enhancer	Fetal Stomach	stomach
7	chr10:118891800-118894600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
8	chr10:118892200-118894600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr10:118893000-118894600	Bivalent Enhancer	Fetal Brain Male	brain
10	chr10:118893200-118894600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:118893200-118894600	Bivalent/Poised TSS	Brain Substantia Nigra	brain
12	chr10:118893400-118894600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
13	chr10:118893400-118894800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr10:118893400-118894800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr10:118893600-118894600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:118893600-118894600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:118893600-118894600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:118893600-118894600	Bivalent Enhancer	Spleen	Spleen
19	chr10:118893800-118894600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:118893800-118894600	Bivalent Enhancer	Liver	Liver
21	chr10:118893800-118894600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
22	chr10:118894000-118894600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:118894000-118894600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:118894000-118894600	Bivalent Enhancer	Left Ventricle	heart
25	chr10:118894000-118894600	Bivalent Enhancer	HUVEC	blood vessel
26	chr10:118894000-118894600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
27	chr10:118894000-118894800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:118894000-118894800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
29	chr10:118894200-118894600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:118894200-118896200	Weak transcription	Pancreas	Pancrea
31	chr10:118894400-118894600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
32	chr10:118894400-118894600	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
33	chr10:118894400-118894600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:118894400-118894600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:118894400-118894600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:118894400-118894600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:118894400-118894600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
38	chr10:118894400-118894600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:118894400-118894600	Bivalent Enhancer	Adipose Nuclei	Adipose
40	chr10:118894400-118894600	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr10:118894400-118894600	Bivalent Enhancer	Colonic Mucosa	Colon
42	chr10:118894400-118894600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
43	chr10:118894400-118894600	Bivalent Enhancer	Placenta	Placenta
44	chr10:118894400-118894600	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
45	chr10:118894400-118894600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
46	chr10:118894400-118894800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
47	chr10:118894400-118894800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:118894400-118894800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:118894400-118894800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
50	chr10:118894400-118894800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell

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