Variant report

Variant	rs561937327
Chromosome Location	chr1:212079576-212079577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	esv3527308	chr1:212079479-212082377	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212076200-212080000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:212076200-212080800	Weak transcription	Esophagus	oesophagus
3	chr1:212076200-212083600	Weak transcription	Pancreas	Pancrea
4	chr1:212077200-212082600	Weak transcription	Colonic Mucosa	Colon
5	chr1:212077400-212082400	Weak transcription	Adipose Nuclei	Adipose
6	chr1:212078000-212082400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:212078000-212082400	Weak transcription	HepG2	liver
8	chr1:212078400-212081800	Weak transcription	Liver	Liver
9	chr1:212078800-212080400	Weak transcription	Fetal Intestine Large	intestine
10	chr1:212078800-212080800	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links