The 2.0 version of rSNPBase

Variant report

Variant rs561940865
Chromosome Location chr7:116384027-116384028
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:116351800-116407000 Weak transcription Duodenum Mucosa Duodenum
2 chr7:116357400-116409800 Weak transcription Placenta Amnion Placenta Amnion
3 chr7:116375000-116418400 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr7:116375800-116411200 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr7:116377800-116395600 Weak transcription NH-A brain
6 chr7:116378000-116389000 Weak transcription Stomach Mucosa stomach
7 chr7:116378800-116422200 Weak transcription ES-WA7 Cell Line embryonic stem cell
8 chr7:116379000-116384600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr7:116379000-116385200 Weak transcription HUES6 Cell Line embryonic stem cell
10 chr7:116379200-116384400 Weak transcription H9 Cell Line embryonic stem cell
11 chr7:116381200-116392200 Weak transcription HUVEC blood vessel
12 chr7:116381400-116413400 Weak transcription NHLF lung
13 chr7:116381600-116384200 Weak transcription Gastric stomach
14 chr7:116381600-116398600 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr7:116381600-116418600 Weak transcription Aorta Aorta
16 chr7:116381800-116385600 Weak transcription Lung lung
17 chr7:116381800-116407000 Weak transcription Pancreas Pancrea
18 chr7:116382000-116398000 Weak transcription Hela-S3 cervix
19 chr7:116382000-116413400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr7:116382200-116384200 Strong transcription Osteobl bone
21 chr7:116382200-116384400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr7:116382200-116384400 Strong transcription A549 lung
23 chr7:116382200-116409800 Weak transcription Placenta Placenta
24 chr7:116382400-116384200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr7:116382400-116384200 Weak transcription Fetal Lung lung
26 chr7:116382400-116384600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr7:116382400-116384800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr7:116382400-116396400 Weak transcription HMEC breast
29 chr7:116382600-116384200 Strong transcription Rectal Mucosa Donor 31 rectum
30 chr7:116383000-116385000 Strong transcription Muscle Satellite Cultured Cells --
31 chr7:116383000-116392400 Weak transcription Left Ventricle heart
32 chr7:116383000-116396800 Weak transcription Psoas Muscle Psoas
33 chr7:116383200-116384200 Strong transcription Breast Myoepithelial Primary Cells Breast
34 chr7:116383200-116384200 Enhancers Liver Liver
35 chr7:116383200-116387800 Weak transcription Fetal Intestine Small intestine
36 chr7:116383600-116397400 Weak transcription HSMM muscle
37 chr7:116383800-116399400 Weak transcription Fetal Muscle Trunk muscle
38 chr7:116383800-116409400 Weak transcription Fetal Kidney kidney
39 chr7:116384000-116388000 Weak transcription Fetal Stomach stomach
40 chr7:116384000-116391800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr7:116384000-116392000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr7:116384000-116397400 Weak transcription NHEK skin
43 chr7:116384000-116405400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr7:116384000-116406200 Weak transcription HepG2 liver

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Last update: Aug 31, 2015