Variant report

Variant	rs561942254
Chromosome Location	chr8:104132583-104132584
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:104132442-104132702	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr8:104132303-104132663	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr8:104132520-104132766	MCF10A-Er-Src	breast:	n/a	n/a
4	GATA3	chr8:104132520-104132894	T-47D	breast:	n/a	n/a
5	KAP1	chr8:104132452-104133084	U2OS	brain:	n/a	n/a
6	MYC	chr8:104132263-104132870	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr8:104132322-104132833	MCF10A-Er-Src	breast:	n/a	chr8:104132405-104132417 chr8:104132401-104132413 chr8:104132618-104132626 chr8:104132395-104132407
8	FOS	chr8:104132252-104133174	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr8:104132323-104133085	MCF10A-Er-Src	breast:	n/a	n/a
10	MYC	chr8:104132252-104132880	MCF10A-Er-Src	breast:	n/a	n/a
11	STAT3	chr8:104132291-104132854	MCF10A-Er-Src	breast:	n/a	chr8:104132405-104132417 chr8:104132401-104132413 chr8:104132618-104132626 chr8:104132395-104132407
12	EP300	chr8:104132543-104132825	SK-N-SH_RA	brain:	n/a	n/a
13	GATA3	chr8:104132501-104132867	T-47D	breast:	n/a	n/a
14	STAT3	chr8:104132514-104132746	MCF10A-Er-Src	breast:	n/a	chr8:104132618-104132626
15	POLR2A	chr8:104131940-104132976	MCF10A-Er-Src	breast:	n/a	n/a
16	GATA2	chr8:104132516-104132913	SH-SY5Y	brain:	n/a	n/a
17	STAT3	chr8:104132424-104133083	MCF10A-Er-Src	breast:	n/a	chr8:104132618-104132626
18	FOS	chr8:104132255-104133085	MCF10A-Er-Src	breast:	n/a	n/a
19	ZNF217	chr8:104132501-104132851	MCF-7	breast:	n/a	n/a
20	REST	chr8:104132459-104132886	MCF-7	breast:	n/a	n/a
21	GATA3	chr8:104132375-104132863	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104131678..104134497-chr8:104225293..104227549,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250929	TF binding region
ENSG00000164929	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv437077	chr8:104132165-104133226	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104119400-104134000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:104122000-104134600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:104123600-104132600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:104127400-104133200	Weak transcription	HSMMtube	muscle
5	chr8:104128400-104132800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:104128600-104132600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:104128600-104133000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:104128800-104132600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:104128800-104132600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:104128800-104133200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:104128800-104134200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:104129000-104133400	Weak transcription	Osteobl	bone
13	chr8:104130800-104133000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:104131000-104132800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr8:104131000-104135200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:104131200-104132600	Enhancers	NH-A	brain
17	chr8:104131200-104134000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:104131200-104134000	Enhancers	HMEC	breast
19	chr8:104131200-104136400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:104131600-104132600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr8:104131600-104133400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:104131800-104132800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr8:104131800-104133200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr8:104131800-104133600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:104132000-104132800	Enhancers	Fetal Intestine Large	intestine
26	chr8:104132000-104133000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:104132000-104133000	Enhancers	Fetal Intestine Small	intestine
28	chr8:104132000-104133600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr8:104132000-104133800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr8:104132000-104134400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:104132200-104132600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:104132200-104132600	Enhancers	Fetal Thymus	thymus
33	chr8:104132200-104132600	Enhancers	GM12878-XiMat	blood
34	chr8:104132200-104132800	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr8:104132200-104132800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:104132200-104132800	Enhancers	Lung	lung
37	chr8:104132200-104133000	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr8:104132200-104133200	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr8:104132200-104133200	Enhancers	NHDF-Ad	bronchial
40	chr8:104132200-104133400	Enhancers	Esophagus	oesophagus
41	chr8:104132200-104134200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr8:104132200-104135600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr8:104132200-104139600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr8:104132400-104132600	Enhancers	NHEK	skin
45	chr8:104132400-104133000	Enhancers	Duodenum Mucosa	Duodenum
46	chr8:104132400-104133200	Enhancers	Brain Angular Gyrus	brain
47	chr8:104132400-104133200	Enhancers	Brain Hippocampus Middle	brain
48	chr8:104132400-104133400	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr8:104132400-104133400	Weak transcription	HSMM	muscle
50	chr8:104132400-104133600	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links