Variant report

Variant	rs561945064
Chromosome Location	chr10:49673574-49673575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49514372..49515875-chr10:49672720..49674716,2	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3376035	chr10:49673571-49676119	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49653000-49673600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:49657800-49677600	Weak transcription	HSMMtube	muscle
4	chr10:49665400-49675000	Weak transcription	HUVEC	blood vessel
5	chr10:49668200-49674400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:49668400-49676200	Weak transcription	NHLF	lung
7	chr10:49668800-49674200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:49669000-49674000	Enhancers	K562	blood
9	chr10:49669200-49674800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:49670200-49675200	Weak transcription	Osteobl	bone
11	chr10:49670600-49673600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:49670800-49673600	Enhancers	Ovary	ovary
13	chr10:49670800-49674200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr10:49670800-49674800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:49671000-49680400	Enhancers	Primary hematopoietic stem cells	blood
16	chr10:49671200-49673800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:49671200-49674000	Enhancers	Fetal Heart	heart
18	chr10:49671200-49674400	Enhancers	Colon Smooth Muscle	Colon
19	chr10:49671200-49675400	Enhancers	Brain Hippocampus Middle	brain
20	chr10:49671400-49673600	Enhancers	Rectal Smooth Muscle	rectum
21	chr10:49671400-49673800	Enhancers	Brain Cingulate Gyrus	brain
22	chr10:49671400-49673800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr10:49671400-49673800	Enhancers	Fetal Lung	lung
24	chr10:49671400-49674200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:49671400-49674200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:49671400-49674200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:49671400-49674800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:49671400-49675200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:49671400-49675600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:49671800-49674200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr10:49671800-49674400	Enhancers	Esophagus	oesophagus
32	chr10:49672000-49673600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:49672200-49674200	Weak transcription	Right Atrium	heart
34	chr10:49672400-49673600	Weak transcription	NHDF-Ad	bronchial
35	chr10:49672400-49674200	Bivalent Enhancer	Fetal Stomach	stomach
36	chr10:49672400-49675200	Bivalent Enhancer	Placenta	Placenta
37	chr10:49672400-49675400	Enhancers	Brain Substantia Nigra	brain
38	chr10:49672400-49677200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:49672400-49683400	Weak transcription	Spleen	Spleen
40	chr10:49672600-49673800	Enhancers	Fetal Brain Male	brain
41	chr10:49672600-49674200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr10:49672600-49674200	Bivalent Enhancer	Fetal Muscle Leg	muscle
43	chr10:49672600-49674400	Enhancers	Left Ventricle	heart
44	chr10:49672600-49681800	Weak transcription	Aorta	Aorta
45	chr10:49672800-49674200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr10:49672800-49674600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:49672800-49675200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:49673000-49673600	Enhancers	Adipose Nuclei	Adipose
49	chr10:49673000-49674000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
50	chr10:49673000-49681200	Weak transcription	HSMM	muscle

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