Variant report

Variant	rs56196132
Chromosome Location	chr7:79158562-79158563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10256991	1.00[EUR][1000 genomes]
rs12111940	1.00[EUR][1000 genomes]
rs2462128	1.00[EUR][1000 genomes]
rs28373730	1.00[EUR][1000 genomes]
rs28633556	1.00[EUR][1000 genomes]
rs2961529	1.00[EUR][1000 genomes]
rs2966589	1.00[EUR][1000 genomes]
rs6970599	1.00[EUR][1000 genomes]
rs6970901	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv888515	chr7:78987060-79221707	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv427792	chr7:79039802-79253373	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv970902	chr7:79046674-79175610	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv888516	chr7:79086317-79221707	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv428175	chr7:79096786-79253373	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv888517	chr7:79122018-79244452	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv888518	chr7:79149775-79315761	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79153800-79158600	Weak transcription	Osteobl	bone
2	chr7:79154600-79158600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:79157000-79159400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:79157000-79159400	Enhancers	HMEC	breast
5	chr7:79157200-79159400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr7:79157200-79159600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:79157400-79159000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:79157400-79159400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:79157600-79159400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:79157600-79159400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:79157600-79159600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:79157800-79159000	Enhancers	Brain Angular Gyrus	brain
13	chr7:79157800-79159000	Enhancers	Brain Substantia Nigra	brain
14	chr7:79157800-79159200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:79157800-79159200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:79157800-79159400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:79157800-79159800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr7:79157800-79160000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:79158000-79158800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:79158000-79159000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr7:79158000-79159200	Enhancers	Brain Hippocampus Middle	brain
22	chr7:79158000-79161800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:79158200-79158600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:79158200-79159800	Enhancers	NHEK	skin
25	chr7:79158400-79158800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:79158400-79159000	Enhancers	Brain Germinal Matrix	brain
27	chr7:79158400-79159400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:79158400-79159600	Enhancers	Brain Inferior Temporal Lobe	brain

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