Variant report

Variant	rs561967107
Chromosome Location	chr17:16797312-16797313
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr17:16797126-16797476	H1-hESC	embryonic stem cell:	n/a	n/a
2	REST	chr17:16797112-16797391	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:16797273-16797323	ECC-1	luminal epithelium:	n/a
2	chr17:16797273-16797323	HepG2	liver:	n/a
3	chr17:16797273-16797323	AG04450	lung:	fetal
4	chr17:16797273-16797323	PANC-1	pancreas:	n/a
5	chr17:16797273-16797323	PFSK-1	brain:	n/a
6	chr17:16797273-16797323	A549	lung:	n/a
7	chr17:16797273-16797323	Caco-2	colon:	n/a
8	chr17:16797273-16797323	HEEpiC	esophagus:	n/a
9	chr17:16797273-16797323	IMR90	lung:	fetal
10	chr17:16797273-16797323	BJ	skin:	n/a
11	chr17:16797273-16797323	SK-N-SH_RA	brain:	n/a
12	chr17:16797273-16797323	SKMC	muscle:	n/a
13	chr17:16797273-16797323	HCF	heart:	n/a
14	chr17:16797273-16797323	LNCaP	prostate:	n/a
15	chr17:16797273-16797323	AoSMC	blood vessel:	n/a
16	chr17:16797273-16797323	NH-A	brain:	n/a
17	chr17:16797273-16797323	AG10803	skin:	n/a
18	chr17:16797273-16797323	ovcar-3	ovarian:	n/a
19	chr17:16797273-16797323	HAEpiC	amniotic membrane:	n/a
20	chr17:16797273-16797323	BE2_C	brain:	n/a
21	chr17:16797273-16797323	Jurkat	blood:	n/a
22	chr17:16797273-16797323	GM19239	blood:	n/a
23	chr17:16797273-16797323	NHBE	bronchial:	n/a
24	chr17:16797273-16797323	ProgFib	skin:	n/a
25	chr17:16797273-16797323	HRPEpiC	eye:	n/a
26	chr17:16797273-16797323	NB4	blood:	n/a
27	chr17:16797273-16797323	GM06990	blood:	n/a
28	chr17:16797273-16797323	GM12878	blood:	n/a
29	chr17:16797273-16797323	HCM	heart:	n/a
30	chr17:16797273-16797323	MCF-7	breast:	n/a
31	chr17:16797273-16797323	NHDF-neo	bronchial:	n/a
32	chr17:16797273-16797323	K562	blood:	n/a
33	chr17:16797273-16797323	RPTEC	kidney:	n/a
34	chr17:16797273-16797323	NT2-D1	testis:	n/a
35	chr17:16797273-16797323	HMEC	breast:	n/a
36	chr17:16797273-16797323	HUVEC	blood vessel:	n/a
37	chr17:16797273-16797323	SK-N-MC	brain:	n/a
38	chr17:16797273-16797323	H1-hESC	embryonic stem cell:	embryo
39	chr17:16797273-16797323	GM12892	blood:	n/a
40	chr17:16797273-16797323	Hela-S3	cervix:	n/a
41	chr17:16797273-16797323	HCPEpiC	choroid plexus:	n/a
42	chr17:16797273-16797323	HPAEpiC	pulmonary alveolar:	n/a
43	chr17:16797273-16797323	HNPCEpiC	eye:	n/a
44	chr17:16797273-16797323	MCF10A-Er-Src	breast:	n/a
45	chr17:16797273-16797323	HIPEpiC	eye:	n/a
46	chr17:16797273-16797323	HCT-116	colon:	n/a
47	chr17:16797273-16797323	AG09309	skin:	n/a
48	chr17:16797273-16797323	SK-N-SH	brain:	n/a
49	chr17:16797273-16797323	U87	brain:	n/a
50	chr17:16797273-16797323	AG09319	gingival:	n/a

No data

Variant related genes	Relation type
ENSG00000265853	TF binding region
ENSG00000265853	CpG island

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758442	chr17:16527056-16817437	Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2758676	chr17:16527056-16817437	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv427991	chr17:16527056-16817437	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv2753951	chr17:16660721-16848750	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv2755100	chr17:16660721-16848750	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv833379	chr17:16683585-16859539	Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	esv3367254	chr17:16785269-16828294	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3338978	chr17:16785520-16828294	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv978375	chr17:16793492-16801263	Weak transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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