The 2.0 version of rSNPBase

Variant report

Variant rs561969949
Chromosome Location chr6:150517839-150517840
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:150499600-150519600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr6:150510600-150518000 Weak transcription Psoas Muscle Psoas
3 chr6:150514800-150524000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr6:150515200-150518200 Weak transcription Right Atrium heart
5 chr6:150515400-150519600 Weak transcription Fetal Brain Male brain
6 chr6:150516400-150518400 Enhancers Rectal Mucosa Donor 31 rectum
7 chr6:150516400-150519000 Enhancers Skeletal Muscle Female skeletal muscle
8 chr6:150516600-150518200 Enhancers Fetal Kidney kidney
9 chr6:150516800-150518000 Enhancers Primary B cells from cord blood blood
10 chr6:150516800-150518800 Enhancers Primary hematopoietic stem cells short term culture blood
11 chr6:150516800-150518800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr6:150516800-150518800 Enhancers Fetal Intestine Large intestine
13 chr6:150516800-150518800 Enhancers Fetal Intestine Small intestine
14 chr6:150516800-150518800 Enhancers Fetal Muscle Leg muscle
15 chr6:150517000-150518000 Enhancers Duodenum Mucosa Duodenum
16 chr6:150517000-150518200 Enhancers Pancreatic Islets Pancreatic Islet
17 chr6:150517000-150518200 Enhancers Rectal Mucosa Donor 29 rectum
18 chr6:150517000-150518400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr6:150517000-150518600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr6:150517000-150518600 Enhancers HMEC breast
21 chr6:150517000-150518600 Enhancers NHEK skin
22 chr6:150517000-150519000 Enhancers Colonic Mucosa Colon
23 chr6:150517200-150518200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr6:150517200-150518200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
25 chr6:150517200-150518200 Enhancers Fetal Lung lung
26 chr6:150517200-150518200 Weak transcription Fetal Muscle Trunk muscle
27 chr6:150517200-150518200 Weak transcription Lung lung
28 chr6:150517200-150518200 Weak transcription Pancreas Pancrea
29 chr6:150517200-150518200 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr6:150517200-150518200 Enhancers Stomach Mucosa stomach
31 chr6:150517200-150518400 Enhancers Esophagus oesophagus
32 chr6:150517200-150518400 Enhancers Rectal Smooth Muscle rectum
33 chr6:150517400-150518400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr6:150517400-150518400 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr6:150517400-150519000 Enhancers Skeletal Muscle Male skeletal muscle
36 chr6:150517400-150519800 Weak transcription K562 blood
37 chr6:150517600-150518000 Weak transcription Left Ventricle heart
38 chr6:150517600-150518000 Weak transcription Right Ventricle heart
39 chr6:150517600-150529200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr6:150517800-150518200 Flanking Active TSS Fetal Heart heart
41 chr6:150517800-150518600 Enhancers Fetal Brain Female brain

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Last update: Aug 31, 2015