Variant report

Variant	rs56198490
Chromosome Location	chr2:113738955-113738956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IL36B-1	chr2:113738743-113739011	NONHSAT073737

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10173618	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10196340	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10496447	0.83[ASN][1000 genomes]
rs11677903	0.91[ASN][1000 genomes]
rs11680584	0.91[ASN][1000 genomes]
rs11680975	0.91[ASN][1000 genomes]
rs13392494	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13407838	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13410389	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13415097	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1446516	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17042691	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17607787	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17659543	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17660913	0.83[ASN][1000 genomes]
rs28938790	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28947168	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28947170	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28947203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28954071	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28954077	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28993969	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34345011	0.83[ASN][1000 genomes]
rs34862832	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35229022	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3768769	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923566	0.91[ASN][1000 genomes]
rs4592853	0.91[ASN][1000 genomes]
rs6542107	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6714534	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7597623	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv961489	chr2:113737947-113742104	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113733800-113739200	Enhancers	Primary T cells from cord blood	blood
2	chr2:113735200-113739000	Enhancers	Fetal Thymus	thymus
3	chr2:113736000-113747400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:113737000-113739200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr2:113737400-113742400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:113737600-113742600	Weak transcription	Thymus	Thymus
7	chr2:113738000-113739200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr2:113738400-113742000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr2:113738400-113742400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:113738400-113742400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr2:113738600-113742000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr2:113738600-113742200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr2:113738600-113742200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:113738600-113742400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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