Variant report

Variant	rs561988175
Chromosome Location	chr11:67182896-67182897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr11:67182738-67182982	H1-hESC	embryonic stem cell:	n/a	chr11:67182803-67182813
2	POLR2A	chr11:67182658-67182900	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:67182567..67190511-chr11:67270739..67276166,13	MCF-7	breast:
2	chr11:67180570..67183103-chr11:67271029..67272927,2	K562	blood:
3	chr11:67181921..67184734-chr11:67234626..67236825,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CARNS1-2	chr11:67182839-67182957	NONHSAT022419

Variant related genes	Relation type
CARNS1	TF binding region
ENSG00000172663	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000167797	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
4	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
6	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
7	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
8	nsv897804	chr11:67090571-67224278	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
9	nsv1039205	chr11:67135246-67252397	Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
10	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
11	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
12	nsv897805	chr11:67155210-67283891	ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
13	nsv897806	chr11:67155210-67294308	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
14	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
15	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
16	nsv897809	chr11:67156875-67276235	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
17	nsv516453	chr11:67164495-67186000	Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
18	nsv555254	chr11:67164495-67288594	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
19	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
20	nsv897810	chr11:67166310-67196237	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
21	nsv897811	chr11:67166984-67218909	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
22	nsv897812	chr11:67174597-67198887	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
23	nsv897813	chr11:67175692-67283891	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
24	nsv521723	chr11:67175692-67311258	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
25	nsv555255	chr11:67177797-67191449	Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
26	esv3396892	chr11:67182001-67184549	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
27	esv3352884	chr11:67182326-67184374	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
28	esv1847460	chr11:67182600-67219337	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67177800-67183400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:67178400-67184200	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr11:67181200-67183400	Weak transcription	HSMMtube	muscle
4	chr11:67182200-67183600	Active TSS	Brain Angular Gyrus	brain
5	chr11:67182200-67183600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr11:67182200-67183600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:67182200-67183800	Active TSS	Brain Cingulate Gyrus	brain
8	chr11:67182200-67183800	Active TSS	Brain Substantia Nigra	brain
9	chr11:67182400-67183000	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:67182400-67183000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
11	chr11:67182400-67183000	Flanking Active TSS	Primary B cells from peripheral blood	blood
12	chr11:67182400-67183000	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr11:67182400-67183000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr11:67182400-67183000	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr11:67182400-67183000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr11:67182400-67183000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:67182400-67183000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
18	chr11:67182400-67183000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:67182400-67183000	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr11:67182400-67183000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr11:67182400-67183200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
22	chr11:67182400-67183200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:67182400-67183600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
24	chr11:67182400-67183600	Bivalent Enhancer	Fetal Intestine Small	intestine
25	chr11:67182400-67183600	Flanking Active TSS	Thymus	Thymus
26	chr11:67182400-67183800	Active TSS	H9 Cell Line	embryonic stem cell
27	chr11:67182400-67184200	Bivalent Enhancer	Placenta	Placenta
28	chr11:67182400-67184800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:67182400-67185200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr11:67182400-67185400	Enhancers	Lung	lung
31	chr11:67182400-67187200	Enhancers	Pancreas	Pancrea
32	chr11:67182600-67183000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr11:67182600-67183000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
34	chr11:67182600-67183000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:67182600-67183000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
36	chr11:67182600-67183000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr11:67182600-67183000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr11:67182600-67183000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr11:67182600-67183000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:67182600-67183000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:67182600-67183000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:67182600-67183000	Flanking Active TSS	Colonic Mucosa	Colon
43	chr11:67182600-67183000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
44	chr11:67182600-67183000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
45	chr11:67182600-67183000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
46	chr11:67182600-67183000	Enhancers	Rectal Smooth Muscle	rectum
47	chr11:67182600-67183000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
48	chr11:67182600-67183000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
49	chr11:67182600-67183000	Bivalent Enhancer	Stomach Mucosa	stomach
50	chr11:67182600-67183000	Active TSS	Hela-S3	cervix

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