Variant report

Variant	rs56200255
Chromosome Location	chr16:76196828-76196829
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11863922	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11864435	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12149144	0.89[EUR][1000 genomes]
rs12149693	0.90[EUR][1000 genomes]
rs12597900	0.93[EUR][1000 genomes]
rs12599717	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1345851	0.93[EUR][1000 genomes]
rs1364132	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1423868	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16943890	0.93[EUR][1000 genomes]
rs17616209	0.93[EUR][1000 genomes]
rs17616300	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1820214	0.86[EUR][1000 genomes]
rs1820215	0.84[EUR][1000 genomes]
rs1820216	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2042378	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2288059	0.93[EUR][1000 genomes]
rs2288061	0.93[EUR][1000 genomes]
rs28427486	0.93[EUR][1000 genomes]
rs28502178	0.92[EUR][1000 genomes]
rs28694017	0.92[EUR][1000 genomes]
rs35188445	0.91[EUR][1000 genomes]
rs3851748	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41526748	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4888469	0.92[EUR][1000 genomes]
rs4888470	0.93[EUR][1000 genomes]
rs4888471	0.93[EUR][1000 genomes]
rs4888472	0.93[EUR][1000 genomes]
rs4888473	0.93[EUR][1000 genomes]
rs4888474	0.93[EUR][1000 genomes]
rs4888475	0.93[EUR][1000 genomes]
rs4888476	0.93[EUR][1000 genomes]
rs4888477	0.93[EUR][1000 genomes]
rs4888478	0.93[EUR][1000 genomes]
rs4888479	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4888481	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57240485	0.93[EUR][1000 genomes]
rs57581470	0.92[EUR][1000 genomes]
rs58760118	0.93[EUR][1000 genomes]
rs61186286	0.89[EUR][1000 genomes]
rs67048930	0.93[EUR][1000 genomes]
rs7187805	0.93[EUR][1000 genomes]
rs7195475	0.91[EUR][1000 genomes]
rs7195777	0.93[EUR][1000 genomes]
rs7198334	0.92[EUR][1000 genomes]
rs724246	0.93[EUR][1000 genomes]
rs724247	0.93[EUR][1000 genomes]
rs8051074	0.91[EUR][1000 genomes]
rs8056266	0.93[EUR][1000 genomes]
rs8061940	0.87[EUR][1000 genomes]
rs918690	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9635568	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9635569	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9635570	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9635575	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs972538	0.92[EUR][1000 genomes]
rs9937977	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1064607	chr16:75787129-76449101	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1065794	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv542961	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1059162	chr16:75929348-76730816	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv572995	chr16:75935025-76708417	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv572996	chr16:75935025-76735249	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv817220	chr16:75939705-76735383	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1056021	chr16:75955522-76729765	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv542962	chr16:75955522-76729765	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv906935	chr16:76031737-76453110	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv906936	chr16:76031737-76768178	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	nsv833284	chr16:76057741-76205989	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv817549	chr16:76067068-76582099	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv833285	chr16:76136345-76345398	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1055567	chr16:76151892-76200446	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1065644	chr16:76166579-76475634	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv524334	chr16:76169731-76197034	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv573001	chr16:76169731-76197034	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv573002	chr16:76174188-76280843	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv906938	chr16:76174188-76293092	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	nsv471096	chr16:76186991-76230778	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv906939	chr16:76188497-76277895	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:76196600-76197000	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links