Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMARCB1	chr11:119991916-119993952	Hela-S3	cervix:	n/a	chr11:119993842-119993851 chr11:119993841-119993850
2	POLR2A	chr11:119991787-119995121	Hela-S3	cervix:	n/a	n/a
3	GABPA	chr11:119991867-119992481	MCF-7	breast:	n/a	n/a
4	TFAP2A	chr11:119992106-119993288	Hela-S3	cervix:	n/a	chr11:119992635-119992650 chr11:119992639-119992650 chr11:119992639-119992650 chr11:119992377-119992387
5	POLR2A	chr11:119991838-119994802	Hela-S3	cervix:	n/a	n/a
6	GATA3	chr11:119992064-119993174	MCF-7	breast:	n/a	chr11:119992286-119992295 chr11:119992289-119992298
7	SMARCC1	chr11:119991833-119996186	Hela-S3	cervix:	n/a	chr11:119993842-119993851 chr11:119995853-119995862 chr11:119993841-119993850 chr11:119994713-119994722
8	STAT3	chr11:119992003-119992151	MCF10A-Er-Src	breast:	n/a	chr11:119992013-119992027 chr11:119992016-119992025 chr11:119992015-119992024
9	POLR2A	chr11:119992093-119993379	Hela-S3	cervix:	n/a	n/a
10	TFAP2C	chr11:119992052-119993408	Hela-S3	cervix:	n/a	n/a
11	CTCF	chr11:119991920-119992170	NHEK	skin:	n/a	n/a
12	SMC3	chr11:119992028-119993268	Hela-S3	cervix:	n/a	n/a
13	MAX	chr11:119992030-119993189	MCF-7	breast:	n/a	chr11:119992434-119992444
14	RCOR1	chr11:119992088-119993950	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:119990371..119993698-chr11:120037887..120041016,6	MCF-7	breast:
2	chr11:119990218..119993185-chr11:119994723..119998416,4	K562	blood:
3	chr11:119992107..119994567-chr11:120009192..120013001,3	MCF-7	breast:
4	chr11:119990134..119993227-chr11:120007102..120010731,5	MCF-7	breast:
5	chr11:119598280..119601010-chr11:119990751..119994590,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:7)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1050132	chr11:119976310-120010437	Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119985400-119993000	Weak transcription	Right Atrium	heart
2	chr11:119987400-119994400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:119987800-119992200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:119989200-119992400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:119989400-119992200	Genic enhancers	Esophagus	oesophagus
6	chr11:119990200-119992400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:119990400-119993000	Weak transcription	Gastric	stomach
8	chr11:119991200-119996600	Enhancers	Placenta	Placenta
9	chr11:119991200-119997000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr11:119991200-119999000	Genic enhancers	HMEC	breast
11	chr11:119991400-119994200	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
12	chr11:119991400-119996000	Enhancers	Stomach Mucosa	stomach
13	chr11:119991600-119992200	Enhancers	Spleen	Spleen
14	chr11:119991600-119992400	Enhancers	Fetal Muscle Trunk	muscle
15	chr11:119991800-119992600	Transcr. at gene 5' and 3'	NHEK	skin
16	chr11:119992000-119992200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:119992000-119992600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:119992000-119992600	Enhancers	Fetal Thymus	thymus
19	chr11:119992000-119992600	Flanking Active TSS	Hela-S3	cervix
20	chr11:119992000-119993000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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