Variant report

Variant	rs56202282
Chromosome Location	chr3:158909257-158909258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158908150..158910931-chr3:158911057..158913839,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11712459	0.92[AFR][1000 genomes]
rs73877517	0.92[AFR][1000 genomes]
rs73877527	0.92[AFR][1000 genomes]
rs73877540	1.00[AFR][1000 genomes]
rs73877547	1.00[AFR][1000 genomes]
rs73877554	1.00[AFR][1000 genomes]
rs73877557	1.00[AFR][1000 genomes]
rs73877558	1.00[AFR][1000 genomes]
rs73877568	0.80[AFR][1000 genomes]
rs73877570	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3426016	chr3:158676623-158979242	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv491927	chr3:158692653-158952780	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158907400-158910000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:158907400-158910000	Enhancers	Osteobl	bone
3	chr3:158907400-158910400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:158907400-158910400	Enhancers	HUVEC	blood vessel
5	chr3:158907600-158909400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:158907600-158909800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:158907600-158909800	Enhancers	NHLF	lung
8	chr3:158907600-158910000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:158907600-158910000	Enhancers	HMEC	breast
10	chr3:158907600-158910200	Enhancers	NH-A	brain
11	chr3:158907600-158910800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:158907800-158910200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:158908000-158909400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:158908400-158910000	Enhancers	A549	lung
15	chr3:158908800-158909800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:158908800-158910000	Enhancers	HSMM	muscle
17	chr3:158909000-158909400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:158909200-158909400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:158909200-158909400	Enhancers	HSMMtube	muscle
20	chr3:158909200-158909800	Enhancers	Hela-S3	cervix
21	chr3:158909200-158910200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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