Variant report

Variant	rs562035044
Chromosome Location	chr15:72269733-72269734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv457197	chr15:72203517-72296328	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv569910	chr15:72203517-72296328	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv569911	chr15:72203517-72305982	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv457198	chr15:72203517-72325595	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv569912	chr15:72203517-72325595	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv457199	chr15:72261385-72302667	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv569913	chr15:72261385-72302667	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv457200	chr15:72261385-72325595	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv569914	chr15:72261385-72325595	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
18	nsv569915	chr15:72267164-72307691	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv569916	chr15:72268986-72325595	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72225000-72281600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:72225000-72282000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:72225000-72305200	Weak transcription	Psoas Muscle	Psoas
4	chr15:72225000-72305600	Weak transcription	Gastric	stomach
5	chr15:72225800-72270200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:72226600-72281800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr15:72226800-72271200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr15:72226800-72343600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:72227600-72281600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:72227600-72281800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:72227800-72281600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr15:72227800-72326200	Weak transcription	Fetal Brain Male	brain
13	chr15:72228800-72279600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:72228800-72281600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:72230600-72291000	Weak transcription	Primary B cells from cord blood	blood
16	chr15:72240200-72282200	Weak transcription	Aorta	Aorta
17	chr15:72244200-72281800	Weak transcription	Brain Germinal Matrix	brain
18	chr15:72244400-72298600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr15:72244800-72281600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr15:72246600-72293600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:72247800-72281600	Weak transcription	Liver	Liver
22	chr15:72250200-72281600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:72250200-72291200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:72253000-72281600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:72255200-72284000	Weak transcription	Stomach Mucosa	stomach
26	chr15:72255400-72281600	Weak transcription	A549	lung
27	chr15:72257200-72282200	Weak transcription	Thymus	Thymus
28	chr15:72257400-72281600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:72257600-72281600	Weak transcription	Brain Hippocampus Middle	brain
30	chr15:72259800-72281600	Weak transcription	Brain Substantia Nigra	brain
31	chr15:72260000-72281800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:72260400-72274600	Weak transcription	HUVEC	blood vessel
33	chr15:72260400-72281600	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:72260400-72291200	Weak transcription	Brain Anterior Caudate	brain
35	chr15:72260400-72301000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:72261000-72326200	Weak transcription	NH-A	brain
37	chr15:72262400-72293000	Weak transcription	Small Intestine	intestine
38	chr15:72262600-72291000	Weak transcription	NHDF-Ad	bronchial
39	chr15:72262800-72281600	Weak transcription	Osteobl	bone
40	chr15:72263400-72281600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:72263400-72281800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:72263600-72300400	Weak transcription	NHLF	lung
43	chr15:72264000-72281600	Weak transcription	Fetal Brain Female	brain
44	chr15:72264000-72301800	Weak transcription	Colonic Mucosa	Colon
45	chr15:72264200-72270400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr15:72264200-72270400	Strong transcription	Fetal Muscle Leg	muscle
47	chr15:72264200-72271000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:72264400-72269800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr15:72264600-72281600	Weak transcription	Brain Angular Gyrus	brain
50	chr15:72266000-72270600	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links