Variant report

Variant	rs56203772
Chromosome Location	chr5:74165852-74165853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1048167	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10515192	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10515194	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10515199	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11959570	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16872220	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16872231	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16872235	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16872242	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16872259	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872323	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872345	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872349	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872362	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17561738	1.00[ASN][1000 genomes]
rs55899032	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55920995	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56127814	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56192858	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57202395	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57549677	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58864890	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60492282	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453076	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6453079	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6453082	0.92[EUR][1000 genomes]
rs6861935	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870806	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873912	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6873998	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6877188	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6881400	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882035	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6883278	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883420	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884338	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6894177	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6898684	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72764630	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72764643	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72764647	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72764648	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72764650	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72764654	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72764655	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72764656	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72764657	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72764663	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72764669	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72764675	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72764676	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72764683	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72764684	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72764687	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72764690	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72766504	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713812	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7732440	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7732843	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs957680	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9765469	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs56203772	NSA2	cis	Thyroid	GTEx
rs56203772	NSA2	cis	Esophagus Mucosa	GTEx
rs56203772	NSA2	cis	lung	GTEx
rs56203772	NSA2	cis	Adipose Subcutaneous	GTEx
rs56203772	NSA2	cis	Muscle Skeletal	GTEx
rs56203772	NSA2	cis	Heart Left Ventricle	GTEx
rs56203772	NSA2	cis	Artery Tibial	GTEx
rs56203772	NSA2	cis	Nerve Tibial	GTEx
rs56203772	TINP1	Cis_1M	lymphoblastoid	RTeQTL
rs56203772	NSA2	cis	Skin Sun Exposed Lower leg	GTEx
rs56203772	NSA2	cis	Artery Aorta	GTEx
rs56203772	NSA2	cis	Esophagus Muscularis	GTEx
rs56203772	NSA2	cis	Whole Blood	GTEx
rs56203772	NSA2	cis	Stomach	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74163000-74166000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:74163000-74166000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:74163200-74166400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:74163400-74166800	Enhancers	HepG2	liver
5	chr5:74163800-74166600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:74163800-74166800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:74164000-74167000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:74164200-74166400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:74164200-74166400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:74164600-74166800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:74164800-74166400	Enhancers	HMEC	breast
12	chr5:74164800-74172000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:74165000-74166000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:74165400-74166800	Enhancers	NHEK	skin
15	chr5:74165400-74172200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:74165800-74166800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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