Variant report

Variant	rs562038468
Chromosome Location	chr10:23632454-23632455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr10:23632432-23633834	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23631888..23635089-chr10:23727661..23730060,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224215	TF binding region
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357321	chr10:23631971-23634519	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3321964	chr10:23632396-23633894	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23627400-23632600	Weak transcription	Left Ventricle	heart
2	chr10:23628600-23632600	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr10:23628600-23632600	Weak transcription	Right Atrium	heart
4	chr10:23628600-23632800	Weak transcription	Liver	Liver
5	chr10:23628800-23632600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:23630400-23633200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr10:23630400-23633200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr10:23630600-23632600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:23630600-23633200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:23631200-23632600	Bivalent Enhancer	Placenta	Placenta
11	chr10:23631400-23633400	Enhancers	Fetal Heart	heart
12	chr10:23631600-23632600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:23631800-23632600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:23632000-23632800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr10:23632000-23633400	Enhancers	Lung	lung
16	chr10:23632000-23634000	Active TSS	Brain Hippocampus Middle	brain
17	chr10:23632200-23632600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:23632200-23632600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:23632200-23632600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
20	chr10:23632200-23632600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:23632200-23632600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
22	chr10:23632200-23632600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
23	chr10:23632200-23632600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr10:23632200-23632600	Flanking Active TSS	Brain Anterior Caudate	brain
25	chr10:23632200-23632600	Bivalent Enhancer	Fetal Lung	lung
26	chr10:23632200-23632600	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr10:23632200-23632600	Bivalent Enhancer	Fetal Stomach	stomach
28	chr10:23632200-23633600	Active TSS	Brain Angular Gyrus	brain
29	chr10:23632200-23633800	Weak transcription	Hela-S3	cervix
30	chr10:23632200-23634000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
31	chr10:23632200-23634000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:23632400-23632600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
33	chr10:23632400-23632600	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
34	chr10:23632400-23632600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:23632400-23632600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
36	chr10:23632400-23632600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:23632400-23632600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:23632400-23632600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:23632400-23632600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:23632400-23632600	Active TSS	Primary T helper cells fromperipheralblood	blood
41	chr10:23632400-23632600	Enhancers	Muscle Satellite Cultured Cells	--
42	chr10:23632400-23632600	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr10:23632400-23632600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:23632400-23632600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:23632400-23632600	Flanking Active TSS	Brain Substantia Nigra	brain
46	chr10:23632400-23632600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
47	chr10:23632400-23632600	Active TSS	Fetal Brain Male	brain
48	chr10:23632400-23632600	Flanking Active TSS	Fetal Kidney	kidney
49	chr10:23632400-23632600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
50	chr10:23632400-23632600	Enhancers	Skeletal Muscle Female	skeletal muscle

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