Variant report

Variant	rs562069733
Chromosome Location	chr11:10131030-10131031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10129087..10131222-chr11:10133484..10136579,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10120400-10142800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:10121400-10131200	Weak transcription	Liver	Liver
3	chr11:10122200-10144200	Weak transcription	Left Ventricle	heart
4	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:10122400-10131200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:10122400-10138600	Weak transcription	Esophagus	oesophagus
7	chr11:10122800-10132800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:10122800-10141200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:10122800-10142600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:10123200-10156400	Weak transcription	Fetal Intestine Small	intestine
11	chr11:10126200-10143000	Weak transcription	Ovary	ovary
12	chr11:10128800-10132200	Enhancers	Colon Smooth Muscle	Colon
13	chr11:10128800-10132200	Enhancers	Fetal Heart	heart
14	chr11:10129000-10131400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr11:10129000-10131800	Enhancers	Adipose Nuclei	Adipose
16	chr11:10129000-10131800	Enhancers	Rectal Smooth Muscle	rectum
17	chr11:10129000-10132400	Enhancers	Osteobl	bone
18	chr11:10130200-10131200	Enhancers	Fetal Muscle Leg	muscle
19	chr11:10130400-10131200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr11:10130400-10131400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:10130400-10131400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr11:10130400-10131800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:10130400-10132000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr11:10130400-10132200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:10130400-10133000	Enhancers	NHLF	lung
26	chr11:10130600-10131400	Enhancers	Stomach Smooth Muscle	stomach
27	chr11:10130600-10131800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:10130800-10131600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr11:10130800-10131800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr11:10130800-10131800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:10130800-10131800	Enhancers	Fetal Lung	lung
32	chr11:10130800-10131800	Enhancers	HSMM	muscle
33	chr11:10130800-10132000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:10130800-10132200	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr11:10130800-10132600	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr11:10130800-10132600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr11:10131000-10131200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:10131000-10131200	Enhancers	Aorta	Aorta
39	chr11:10131000-10131200	Enhancers	Gastric	stomach
40	chr11:10131000-10131200	Enhancers	Psoas Muscle	Psoas
41	chr11:10131000-10131400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:10131000-10131400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:10131000-10131400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:10131000-10131400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr11:10131000-10131400	Flanking Active TSS	HSMMtube	muscle
46	chr11:10131000-10131400	Flanking Active TSS	NHDF-Ad	bronchial
47	chr11:10131000-10131600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr11:10131000-10131600	Enhancers	H1 Cell Line	embryonic stem cell
49	chr11:10131000-10131600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr11:10131000-10131600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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