Variant report

Variant	rs562090572
Chromosome Location	chr15:27113759-27113760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU5F1	chr15:27113433-27113786	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:27110118..27111814-chr15:27112231..27114077,2	K562	blood:

Variant related genes	Relation type
GABRA5	TF binding region
ENSG00000186297	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530664	chr15:26821078-27296222	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1041629	chr15:26919868-27192078	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1823300	chr15:27068434-27116718	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv530815	chr15:27102003-27866013	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv3442555	chr15:27111284-27113832	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1836031	chr15:27112265-27189168	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:27111200-27114000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr15:27111800-27114000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr15:27111800-27114000	Bivalent Enhancer	Fetal Brain Male	brain
4	chr15:27111800-27114000	Active TSS	A549	lung
5	chr15:27112000-27113800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
6	chr15:27112000-27113800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:27112000-27114000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr15:27112000-27114000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
9	chr15:27112000-27114000	Bivalent/Poised TSS	Fetal Brain Female	brain
10	chr15:27112400-27113800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
11	chr15:27112600-27113800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:27113000-27114000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
13	chr15:27113400-27113800	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:27113400-27113800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:27113600-27113800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
16	chr15:27113600-27113800	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
17	chr15:27113600-27113800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
18	chr15:27113600-27113800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:27113600-27113800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:27113600-27113800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
21	chr15:27113600-27113800	Bivalent Enhancer	Liver	Liver
22	chr15:27113600-27113800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
23	chr15:27113600-27113800	Bivalent/Poised TSS	NH-A	brain
24	chr15:27113600-27114000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
25	chr15:27113600-27114000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
26	chr15:27113600-27114000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell

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