Variant report

Variant	rs562092623
Chromosome Location	chr9:16571106-16571107
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv528443	chr9:16570142-16581967	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16552800-16571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:16553000-16575200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:16556400-16575600	Weak transcription	HSMM	muscle
4	chr9:16560200-16571200	Weak transcription	Ovary	ovary
5	chr9:16560200-16571400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:16560200-16571600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:16566600-16573000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:16568800-16575200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:16569600-16572200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:16569600-16572400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:16569600-16572400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:16569800-16572000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:16569800-16572400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:16569800-16582400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:16570000-16571200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:16570000-16572200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:16570400-16571400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:16570400-16572400	Enhancers	Colon Smooth Muscle	Colon
19	chr9:16570600-16571200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:16570600-16571200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:16570600-16571400	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr9:16570600-16571400	Enhancers	A549	lung
23	chr9:16570600-16571600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:16570600-16571800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:16570600-16572200	Enhancers	Primary hematopoietic stem cells	blood
26	chr9:16570600-16572200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr9:16570600-16572600	Enhancers	Osteobl	bone
28	chr9:16570600-16572800	Enhancers	NHLF	lung
29	chr9:16570600-16573000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:16570800-16571200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:16570800-16571600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:16570800-16572800	Enhancers	NHDF-Ad	bronchial
33	chr9:16570800-16575800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr9:16571000-16571600	Enhancers	Duodenum Mucosa	Duodenum
35	chr9:16571000-16571800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:16571000-16572000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr9:16571000-16572400	Enhancers	Adipose Nuclei	Adipose
38	chr9:16571000-16572800	Enhancers	Fetal Lung	lung
39	chr9:16571000-16573600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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