The 2.0 version of rSNPBase

Variant report

Variant rs562104142
Chromosome Location chr8:59978201-59978202
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr8:59957800-59989800 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr8:59968600-59981200 Weak transcription Primary T helper naive cells fromperipheralblood blood
3 chr8:59969600-59979400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr8:59969600-59995400 Weak transcription Osteobl bone
5 chr8:59971400-59979200 Weak transcription Small Intestine intestine
6 chr8:59971400-59982400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr8:59971600-59978600 Weak transcription Thymus Thymus
8 chr8:59971800-59978800 Weak transcription Fetal Heart heart
9 chr8:59972400-59978400 Weak transcription Rectal Smooth Muscle rectum
10 chr8:59973400-59980600 Enhancers iPS-15b Cell Line embryonic stem cell
11 chr8:59974400-59979600 Enhancers HUES6 Cell Line embryonic stem cell
12 chr8:59974400-59981200 Weak transcription Fetal Thymus thymus
13 chr8:59974800-59981200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr8:59975000-59979600 Weak transcription Primary T cells fromperipheralblood blood
15 chr8:59975000-59980000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr8:59975200-59980000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
17 chr8:59975600-59979600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
18 chr8:59975800-59980400 Enhancers Cortex derived primary cultured neurospheres brain
19 chr8:59976000-59979400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
20 chr8:59976400-59979000 Enhancers Primary hematopoietic stem cells blood
21 chr8:59976400-59979600 Enhancers Primary hematopoietic stem cells short term culture blood
22 chr8:59976400-59979600 Enhancers Colon Smooth Muscle Colon
23 chr8:59976400-59979800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr8:59976600-59979400 Enhancers Pancreatic Islets Pancreatic Islet
25 chr8:59976600-59979800 Enhancers Brain Germinal Matrix brain
26 chr8:59976600-59981400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr8:59976800-59978400 Weak transcription H9 Cell Line embryonic stem cell
28 chr8:59977000-59978400 Weak transcription H1 Cell Line embryonic stem cell
29 chr8:59977000-59980400 Enhancers ES-I3 Cell Line embryonic stem cell
30 chr8:59977000-59981000 Weak transcription Dnd41 blood
31 chr8:59977200-59982400 Enhancers HUES64 Cell Line embryonic stem cell
32 chr8:59977200-59983800 Weak transcription Fetal Brain Male brain
33 chr8:59977400-59978600 Enhancers Primary B cells from cord blood blood
34 chr8:59977400-59978800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr8:59977400-59980200 Enhancers Primary B cells from peripheral blood blood
36 chr8:59977600-59978400 Flanking Active TSS HUES48 Cell Line embryonic stem cell
37 chr8:59977600-59978800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
38 chr8:59977600-59979200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
39 chr8:59977600-59979400 Enhancers Primary T cells from cord blood blood
40 chr8:59977600-59979600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr8:59977800-59978800 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
42 chr8:59977800-59979400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
43 chr8:59978000-59978400 Enhancers ES-WA7 Cell Line embryonic stem cell
44 chr8:59978000-59978400 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
45 chr8:59978000-59995600 Weak transcription Duodenum Mucosa Duodenum
46 chr8:59978200-59978600 Enhancers Sigmoid Colon Sigmoid Colon
47 chr8:59978200-59979800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr8:59978200-59981000 Enhancers iPS-18 Cell Line embryonic stem cell
49 chr8:59978200-59981000 Enhancers Primary monocytes fromperipheralblood blood
50 chr8:59978200-59982200 Weak transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015