Variant report

Variant	rs56211420
Chromosome Location	chr13:87065749-87065750
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11620095	0.84[AMR][1000 genomes]
rs12430190	0.83[AMR][1000 genomes]
rs12867674	0.86[AFR][1000 genomes]
rs12874621	0.86[AFR][1000 genomes]
rs17612602	0.86[AFR][1000 genomes]
rs34344398	0.88[AMR][1000 genomes]
rs34514528	0.86[AFR][1000 genomes]
rs35288959	0.86[AFR][1000 genomes]
rs71442122	0.86[AFR][1000 genomes]
rs9555176	0.88[AMR][1000 genomes]
rs9555314	0.84[AMR][1000 genomes]
rs9558274	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9558350	0.88[AMR][1000 genomes]
rs9558361	0.88[AMR][1000 genomes]
rs9558413	0.88[AMR][1000 genomes]
rs9558531	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9559264	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047136	chr13:86979109-87555131	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2763045	chr13:87005617-87079364	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
3	nsv1048247	chr13:87041270-87073440	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv1039541	chr13:87049807-87087605	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv1041124	chr13:87049807-87100950	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1044671	chr13:87061837-87099841	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1044558	chr13:87061837-87100950	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87064400-87068000	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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