The 2.0 version of rSNPBase

Variant report

Variant rs562119165
Chromosome Location chr2:30523003-30523004
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:30496600-30524200 Weak transcription Right Atrium heart
2 chr2:30511200-30523200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr2:30513800-30523400 Weak transcription Thymus Thymus
4 chr2:30516800-30524200 Weak transcription Lung lung
5 chr2:30518200-30524600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
6 chr2:30522200-30524000 Weak transcription Primary B cells from peripheral blood blood
7 chr2:30522200-30524200 Weak transcription Primary B cells from cord blood blood
8 chr2:30522200-30524400 Enhancers iPS-15b Cell Line embryonic stem cell
9 chr2:30522600-30523200 Enhancers Colon Smooth Muscle Colon
10 chr2:30522600-30523200 Enhancers A549 lung
11 chr2:30522600-30523400 Flanking Active TSS Fetal Heart heart
12 chr2:30522600-30523400 Flanking Active TSS HSMMtube muscle
13 chr2:30522600-30523600 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
14 chr2:30522600-30524400 Enhancers HUES6 Cell Line embryonic stem cell
15 chr2:30522600-30524400 Weak transcription Esophagus oesophagus
16 chr2:30522600-30524600 Enhancers HUES64 Cell Line embryonic stem cell
17 chr2:30522600-30524600 Enhancers Rectal Smooth Muscle rectum
18 chr2:30522600-30524800 Enhancers Left Ventricle heart
19 chr2:30522600-30525000 Enhancers iPS-20b Cell Line embryonic stem cell
20 chr2:30522600-30525000 Enhancers Fetal Stomach stomach
21 chr2:30522600-30525200 Enhancers iPS-18 Cell Line embryonic stem cell
22 chr2:30522600-30525400 Enhancers NHDF-Ad bronchial
23 chr2:30522600-30525600 Enhancers ES-WA7 Cell Line embryonic stem cell
24 chr2:30522600-30525800 Enhancers HUES48 Cell Line embryonic stem cell
25 chr2:30522800-30523400 Enhancers Primary T helper naive cells fromperipheralblood blood
26 chr2:30522800-30523600 Enhancers Right Ventricle heart
27 chr2:30522800-30524200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr2:30522800-30524200 Enhancers Duodenum Smooth Muscle Duodenum
29 chr2:30522800-30524600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
30 chr2:30522800-30524600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr2:30522800-30524600 Enhancers Ovary ovary
32 chr2:30522800-30524600 Flanking Active TSS Stomach Smooth Muscle stomach
33 chr2:30522800-30524800 Enhancers Fetal Lung lung
34 chr2:30522800-30525000 Enhancers ES-I3 Cell Line embryonic stem cell
35 chr2:30522800-30525000 Enhancers H1 Cell Line embryonic stem cell
36 chr2:30522800-30525200 Enhancers H9 Cell Line embryonic stem cell
37 chr2:30522800-30525200 Enhancers Breast Myoepithelial Primary Cells Breast
38 chr2:30522800-30525200 Enhancers NH-A brain
39 chr2:30522800-30525800 Enhancers NHLF lung
40 chr2:30522800-30526000 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
41 chr2:30522800-30526200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
42 chr2:30523000-30523200 Enhancers Placenta Placenta
43 chr2:30523000-30523200 Enhancers GM12878-XiMat blood
44 chr2:30523000-30523400 Enhancers Fetal Muscle Trunk muscle
45 chr2:30523000-30523400 Enhancers K562 blood
46 chr2:30523000-30523600 Enhancers Aorta Aorta
47 chr2:30523000-30523600 Enhancers Fetal Intestine Large intestine
48 chr2:30523000-30523800 Enhancers Skeletal Muscle Male skeletal muscle
49 chr2:30523000-30524200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr2:30523000-30524600 Enhancers Pancreas Pancrea

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Last update: Aug 31, 2015