Variant report

Variant	rs562119631
Chromosome Location	chr14:31435497-31435498
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr14:31435144-31435863	HCT-116	colon:	n/a	n/a
2	ZNF143	chr14:31435481-31435649	H1-hESC	embryonic stem cell:	n/a	n/a
3	KAP1	chr14:31435415-31435848	HEK293	kidney:	n/a	n/a
4	SETDB1	chr14:31435248-31436013	U2OS	brain:	n/a	n/a
5	FOS	chr14:31435022-31436004	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31428811..31431049-chr14:31434848..31436931,2	MCF-7	breast:

Variant related genes	Relation type
STRN3	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv901586	chr14:31365884-31465241	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1231	chr14:31424602-31444721	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	esv3429977	chr14:31435166-31441360	Weak transcription ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31360200-31435600	Weak transcription	Gastric	stomach
2	chr14:31365800-31435600	Weak transcription	Right Ventricle	heart
3	chr14:31377800-31435600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:31378000-31439000	Weak transcription	Psoas Muscle	Psoas
5	chr14:31415000-31437200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:31416000-31435600	Weak transcription	NHLF	lung
7	chr14:31416200-31435600	Weak transcription	Thymus	Thymus
8	chr14:31416600-31435600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:31416600-31435800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr14:31417000-31435600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:31420200-31464400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr14:31423400-31435600	Weak transcription	Hela-S3	cervix
13	chr14:31424400-31435600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:31424400-31435800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr14:31425200-31435600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:31425400-31435600	Weak transcription	Osteobl	bone
17	chr14:31425600-31435600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr14:31425600-31437000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:31425600-31442800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:31425600-31443000	Weak transcription	HUVEC	blood vessel
21	chr14:31429200-31435600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr14:31429400-31435600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr14:31429800-31435600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr14:31433000-31437200	ZNF genes & repeats	Fetal Stomach	stomach
25	chr14:31433200-31436400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
26	chr14:31433200-31436600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:31433200-31436800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
28	chr14:31433200-31436800	ZNF genes & repeats	Fetal Intestine Large	intestine
29	chr14:31433200-31437200	ZNF genes & repeats	Fetal Muscle Leg	muscle
30	chr14:31433200-31437400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:31433200-31437400	ZNF genes & repeats	Fetal Intestine Small	intestine
32	chr14:31433400-31435800	Weak transcription	K562	blood
33	chr14:31433400-31436200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
34	chr14:31433600-31436200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:31433600-31436200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:31433600-31436200	ZNF genes & repeats	Fetal Brain Female	brain
37	chr14:31433600-31436400	ZNF genes & repeats	Adipose Nuclei	Adipose
38	chr14:31433600-31436400	ZNF genes & repeats	Brain Germinal Matrix	brain
39	chr14:31433600-31436400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
40	chr14:31433600-31436400	ZNF genes & repeats	Fetal Lung	lung
41	chr14:31433600-31437000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr14:31433800-31435600	Strong transcription	Primary B cells from cord blood	blood
43	chr14:31433800-31435600	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr14:31434000-31436600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
45	chr14:31434200-31435600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:31434200-31436000	Genic enhancers	HepG2	liver
47	chr14:31434400-31435600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:31434400-31435600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr14:31434400-31435600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr14:31434400-31436400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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