Variant report

Variant	rs562122194
Chromosome Location	chr18:24993112-24993113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331699	chr18:24864438-25095929	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv833601	chr18:24908240-25080975	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv833602	chr18:24993030-25180823	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24989200-24993800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr18:24989600-24993800	Weak transcription	Psoas Muscle	Psoas
3	chr18:24990800-24993400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr18:24991200-24993800	Weak transcription	Adipose Nuclei	Adipose
5	chr18:24991800-24993600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr18:24991800-24994200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr18:24992000-24994600	Enhancers	HSMM	muscle
8	chr18:24992200-24993600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr18:24992400-24993400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr18:24992400-24993400	Weak transcription	NH-A	brain
11	chr18:24992600-24993800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:24992600-24993800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr18:24992800-24993200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr18:24992800-24994000	Weak transcription	Fetal Muscle Leg	muscle
15	chr18:24993000-24993400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr18:24993000-24993800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr18:24993000-24994600	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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