Variant report

Variant	rs562137059
Chromosome Location	chr4:55806249-55806250
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1010982	chr4:55802123-55808403	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3468239	chr4:55805112-55807129	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
5	esv3506921	chr4:55805161-55807069	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv3506922	chr4:55805173-55806980	Enhancers Flanking Active TSS Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv3468240	chr4:55805256-55807075	Weak transcription Flanking Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55796800-55810200	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:55802600-55807600	Weak transcription	Fetal Stomach	stomach
3	chr4:55802600-55808200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:55803200-55806800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:55803400-55806800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:55804000-55808200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:55804200-55806800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:55804200-55808800	Weak transcription	Stomach Mucosa	stomach
9	chr4:55804200-55811200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:55804400-55808000	Weak transcription	NH-A	brain
11	chr4:55805600-55807600	Enhancers	Primary hematopoietic stem cells	blood
12	chr4:55805800-55806800	Enhancers	Primary T cells from cord blood	blood
13	chr4:55805800-55806800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr4:55805800-55807600	Enhancers	HUVEC	blood vessel
15	chr4:55806000-55807400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:55806000-55809600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr4:55806000-55809800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr4:55806200-55807200	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr4:55806200-55808000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr4:55806200-55810000	Enhancers	Primary T cells fromperipheralblood	blood

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