Variant report

Variant	rs56214200
Chromosome Location	chr15:39685230-39685231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:39683407..39685977-chr15:39689632..39691631,2	MCF-7	breast:
2	chr15:39684874..39687815-chr15:39688159..39690874,2	MCF-7	breast:
3	chr1:149223091..149225186-chr15:39684235..39686134,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206737	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17702494	1.00[AFR][1000 genomes]
rs72725006	0.82[EUR][1000 genomes]
rs72725020	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047032	chr15:39679896-39706685	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39681000-39685400	Weak transcription	HepG2	liver
2	chr15:39681000-39688800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr15:39681000-39691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:39682400-39687800	Enhancers	Hela-S3	cervix
5	chr15:39682800-39686800	Enhancers	NHEK	skin
6	chr15:39683200-39686600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:39683200-39687000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr15:39683400-39686000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:39684400-39686200	Weak transcription	Osteobl	bone
10	chr15:39684400-39686600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr15:39684600-39685400	Enhancers	Fetal Heart	heart
12	chr15:39684800-39685600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr15:39684800-39686600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:39684800-39687800	Enhancers	HUVEC	blood vessel
15	chr15:39684800-39688400	Enhancers	Fetal Intestine Large	intestine
16	chr15:39685000-39685600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:39685000-39686800	Enhancers	A549	lung
18	chr15:39685000-39693200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:39685200-39685400	Enhancers	Colon Smooth Muscle	Colon
20	chr15:39685200-39685800	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr15:39685200-39686600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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