Variant report

Variant	rs562156443
Chromosome Location	chr10:94607951-94607952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:94607894-94609438	K562	blood:	n/a	n/a
2	MXI1	chr10:94607292-94609789	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr10:94607951-94609087	GM12892	blood:	n/a	n/a
4	EGR1	chr10:94607689-94609218	MCF-7	breast:	n/a	chr10:94608118-94608129 chr10:94608117-94608130 chr10:94608117-94608130 chr10:94608120-94608130 chr10:94608120-94608129 chr10:94608871-94608885 chr10:94608234-94608243 chr10:94608117-94608130 chr10:94608117-94608131 chr10:94608918-94608932 chr10:94608117-94608130 chr10:94608732-94608745 chr10:94608119-94608129 chr10:94608116-94608131 chr10:94608119-94608129 chr10:94608113-94608135
5	POLR2A	chr10:94607948-94609022	Hela-S3	cervix:	n/a	n/a
6	TCF12	chr10:94607762-94609139	ECC-1	luminal epithelium:	n/a	chr10:94608046-94608056 chr10:94608116-94608123 chr10:94608782-94608790 chr10:94608056-94608063 chr10:94608054-94608064
7	POLR2A	chr10:94607791-94609243	HL-60	blood:	n/a	n/a
8	REST	chr10:94607680-94609409	H1-neurons	neurons:	n/a	chr10:94608635-94608648 chr10:94609399-94609406
9	MXI1	chr10:94607934-94608987	HepG2	liver:	n/a	n/a
10	POLR2A	chr10:94607916-94608988	GM15510	blood:	n/a	n/a
11	POLR2A	chr10:94607911-94609065	GM18505	blood:	n/a	n/a
12	MAX	chr10:94607716-94609256	A549	lung:	n/a	chr10:94608427-94608436
13	CHD2	chr10:94607702-94609187	Hela-S3	cervix:	n/a	n/a
14	NFIC	chr10:94607817-94608821	ECC-1	luminal epithelium:	n/a	n/a
15	ZMIZ1	chr10:94607949-94607951	K562	blood:	n/a	n/a
16	YY1	chr10:94607905-94609070	GM12878	blood:	n/a	chr10:94608431-94608442 chr10:94608583-94608597 chr10:94608068-94608079 chr10:94608859-94608870 chr10:94608280-94608300 chr10:94608071-94608080 chr10:94608697-94608711
17	EGR1	chr10:94607891-94608716	K562	blood:	n/a	chr10:94608118-94608129 chr10:94608117-94608130 chr10:94608117-94608130 chr10:94608120-94608130 chr10:94608120-94608129 chr10:94608234-94608243 chr10:94608117-94608130 chr10:94608117-94608131 chr10:94608117-94608130 chr10:94608119-94608129 chr10:94608116-94608131 chr10:94608119-94608129 chr10:94608113-94608135
18	BHLHE40	chr10:94607896-94608638	GM12878	blood:	n/a	chr10:94608112-94608128 chr10:94608578-94608594
19	EGR1	chr10:94607717-94609297	HCT-116	colon:	n/a	chr10:94608118-94608129 chr10:94608117-94608130 chr10:94608117-94608130 chr10:94608120-94608130 chr10:94608120-94608129 chr10:94608871-94608885 chr10:94608234-94608243 chr10:94608117-94608130 chr10:94608117-94608131 chr10:94608918-94608932 chr10:94608117-94608130 chr10:94608732-94608745 chr10:94608119-94608129 chr10:94608116-94608131 chr10:94608119-94608129 chr10:94608113-94608135
20	POLR2A	chr10:94607904-94609211	Raji	blood:	n/a	n/a
21	TAF1	chr10:94607840-94609032	H1-neurons	neurons:	n/a	n/a
22	SIN3AK20	chr10:94607808-94608968	PANC-1	pancreas:	n/a	n/a
23	E2F4	chr10:94607321-94608436	MCF10A-Er-Src	breast:	n/a	chr10:94608137-94608151 chr10:94608122-94608134 chr10:94608123-94608134
24	RUNX3	chr10:94607808-94608147	GM12878	blood:	n/a	n/a
25	CEBPB	chr10:94607950-94608610	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr10:94607769-94609066	GM12892	blood:	n/a	n/a
27	YY1	chr10:94607875-94609075	SK-N-SH	brain:	n/a	chr10:94608431-94608442 chr10:94608583-94608597 chr10:94608068-94608079 chr10:94608859-94608870 chr10:94608280-94608300 chr10:94608071-94608080 chr10:94608697-94608711
28	POLR2A	chr10:94607895-94608998	GM18951	blood:	n/a	n/a
29	RCOR1	chr10:94606771-94609165	Hela-S3	cervix:	n/a	n/a
30	TAF1	chr10:94607949-94608733	HepG2	liver:	n/a	n/a
31	POLR2A	chr10:94607910-94609069	GM19099	blood:	n/a	n/a
32	MYC	chr10:94607913-94608411	MCF10A-Er-Src	breast:	n/a	n/a
33	EBF1	chr10:94607835-94608270	GM12878	blood:	n/a	n/a
34	EGR1	chr10:94607751-94609306	ECC-1	luminal epithelium:	n/a	chr10:94608118-94608129 chr10:94608117-94608130 chr10:94608117-94608130 chr10:94608120-94608130 chr10:94608120-94608129 chr10:94608871-94608885 chr10:94608234-94608243 chr10:94608117-94608130 chr10:94608117-94608131 chr10:94608918-94608932 chr10:94608117-94608130 chr10:94608732-94608745 chr10:94608119-94608129 chr10:94608116-94608131 chr10:94608119-94608129 chr10:94608113-94608135
35	POLR2A	chr10:94607800-94609064	HUVEC	blood vessel:	n/a	n/a
36	MYC	chr10:94607772-94609206	NB4	blood:	n/a	chr10:94608427-94608436
37	POLR2A	chr10:94607905-94609016	GM19193	blood:	n/a	n/a
38	RFX5	chr10:94607882-94608100	HepG2	liver:	n/a	n/a
39	MXI1	chr10:94607818-94609145	GM12878	blood:	n/a	n/a
40	WRNIP1	chr10:94607902-94607952	GM12878	blood:	n/a	n/a
41	E2F4	chr10:94607946-94608984	K562	blood:	n/a	chr10:94608137-94608151 chr10:94608122-94608134 chr10:94608123-94608134
42	POLR2A	chr10:94607833-94609110	K562	blood:	n/a	n/a
43	STAT1	chr10:94607923-94608060	GM12878	blood:	n/a	n/a
44	HMGN3	chr10:94607926-94609024	K562	blood:	n/a	n/a
45	CCNT2	chr10:94607912-94609050	K562	blood:	n/a	n/a
46	JUND	chr10:94607919-94608442	K562	blood:	n/a	n/a
47	MXI1	chr10:94607679-94609334	IMR90	lung:	n/a	n/a
48	ELF1	chr10:94607881-94609086	GM12878	blood:	n/a	chr10:94608660-94608672 chr10:94608699-94608711
49	TAF1	chr10:94607893-94609146	ECC-1	luminal epithelium:	n/a	n/a
50	MAZ	chr10:94607922-94609111	K562	blood:	n/a	chr10:94608427-94608436

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:94607939-94607989	ECC-1	luminal epithelium:	n/a
2	chr10:94607948-94607998	HCPEpiC	choroid plexus:	n/a
3	chr10:94607939-94607989	GM06990	blood:	n/a
4	chr10:94607950-94608000	PrEC	prostate:	n/a
5	chr10:94607948-94607998	RPTEC	kidney:	n/a
6	chr10:94607948-94607998	HEK293	kidney:	embryo
7	chr10:94607950-94608000	IMR90	lung:	fetal
8	chr10:94607939-94607989	Hela-S3	cervix:	n/a
9	chr10:94607948-94607998	BE2_C	brain:	n/a
10	chr10:94607950-94608000	GM12892	blood:	n/a
11	chr10:94607950-94608000	HPAEpiC	pulmonary alveolar:	n/a
12	chr10:94607950-94608000	HEK293	kidney:	embryo
13	chr10:94607939-94607989	MCF10A-Er-Src	breast:	n/a
14	chr10:94607950-94608000	ovcar-3	ovarian:	n/a
15	chr10:94607939-94607989	HepG2	liver:	n/a
16	chr10:94607939-94607989	AG04450	lung:	fetal
17	chr10:94607950-94608000	BJ	skin:	n/a
18	chr10:94607948-94607998	ECC-1	luminal epithelium:	n/a
19	chr10:94607950-94608000	HepG2	liver:	n/a
20	chr10:94607939-94607989	GM19239	blood:	n/a
21	chr10:94607948-94607998	NHBE	bronchial:	n/a
22	chr10:94607948-94607998	SAEC	small airway:	n/a
23	chr10:94607950-94608000	AoSMC	blood vessel:	n/a
24	chr10:94607948-94607998	A549	lung:	n/a
25	chr10:94607950-94608000	Hepatocyte	liver:	n/a
26	chr10:94607950-94608000	HMEC	breast:	n/a
27	chr10:94607948-94607998	GM12892	blood:	n/a
28	chr10:94607939-94607989	Hepatocyte	liver:	n/a
29	chr10:94607950-94608000	HRPEpiC	eye:	n/a
30	chr10:94607939-94607989	AG09319	gingival:	n/a
31	chr10:94607950-94608000	LNCaP	prostate:	n/a
32	chr10:94607948-94607998	GM12878	blood:	n/a
33	chr10:94607950-94608000	HEEpiC	esophagus:	n/a
34	chr10:94607948-94607998	BJ	skin:	n/a
35	chr10:94607939-94607989	PrEC	prostate:	n/a
36	chr10:94607939-94607989	HNPCEpiC	eye:	n/a
37	chr10:94607939-94607989	H1-hESC	embryonic stem cell:	embryo
38	chr10:94607939-94607989	HCPEpiC	choroid plexus:	n/a
39	chr10:94607939-94607989	PFSK-1	brain:	n/a
40	chr10:94607950-94608000	SAEC	small airway:	n/a
41	chr10:94607939-94607989	SK-N-SH_RA	brain:	n/a
42	chr10:94607939-94607989	SKMC	muscle:	n/a
43	chr10:94607939-94607989	LNCaP	prostate:	n/a
44	chr10:94607939-94607989	GM12878	blood:	n/a
45	chr10:94607950-94608000	HL-60	blood:	n/a
46	chr10:94607939-94607989	HRE	kidney:	n/a
47	chr10:94607948-94607998	NHDF-neo	bronchial:	n/a
48	chr10:94607950-94608000	GM12878	blood:	n/a
49	chr10:94607939-94607989	NHDF-neo	bronchial:	n/a
50	chr10:94607948-94607998	HepG2	liver:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:94332956..94335217-chr10:94607050..94609174,2	MCF-7	breast:
2	chr10:94351135..94353608-chr10:94605711..94608172,2	K562	blood:
3	chr10:94607070..94611530-chr10:94637347..94641279,5	MCF-7	breast:
4	chr10:94448193..94452899-chr10:94604769..94609293,6	K562	blood:
5	chr10:94607085..94609622-chr3:12881442..12883571,2	MCF-7	breast:
6	chr10:94607840..94608395-chr12:58329411..58330143,2	NB4	blood:
7	chr10:94351156..94354361-chr10:94606648..94609927,3	MCF-7	breast:
8	chr10:94331601..94334574-chr10:94607928..94609540,2	MCF-7	breast:

Variant related genes	Relation type
EXOC6	TF binding region
EXOC6	CpG island
ENSG00000138160	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000119912	Chromatin interaction
ENSG00000257698	Chromatin interaction
ENSG00000144713	Chromatin interaction
ENSG00000207496	Chromatin interaction
ENSG00000225118	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357649	chr10:94607197-94609745	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94605400-94608000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr10:94606800-94608000	Flanking Active TSS	Hela-S3	cervix
3	chr10:94607200-94608000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr10:94607200-94608000	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr10:94607200-94608000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:94607200-94608000	Enhancers	Stomach Mucosa	stomach
7	chr10:94607200-94609600	Active TSS	Fetal Kidney	kidney
8	chr10:94607400-94608000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr10:94607400-94608000	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr10:94607400-94608000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr10:94607400-94608000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:94607400-94608000	Flanking Active TSS	Duodenum Mucosa	Duodenum
13	chr10:94607400-94609400	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr10:94607600-94608000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
15	chr10:94607600-94608000	Flanking Active TSS	Primary B cells from peripheral blood	blood
16	chr10:94607600-94608000	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr10:94607600-94608000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr10:94607600-94608000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr10:94607600-94608000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr10:94607600-94608000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr10:94607600-94608000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:94607600-94608000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:94607600-94608000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:94607600-94608000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:94607600-94608000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:94607600-94608000	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr10:94607600-94608000	Flanking Active TSS	Liver	Liver
28	chr10:94607600-94608000	Flanking Active TSS	Brain Angular Gyrus	brain
29	chr10:94607600-94608000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
30	chr10:94607600-94608000	Flanking Active TSS	Fetal Intestine Large	intestine
31	chr10:94607600-94608000	Flanking Active TSS	Fetal Intestine Small	intestine
32	chr10:94607600-94608000	Flanking Active TSS	Fetal Muscle Trunk	muscle
33	chr10:94607600-94608000	Flanking Active TSS	Placenta	Placenta
34	chr10:94607600-94608000	Flanking Active TSS	Dnd41	blood
35	chr10:94607600-94608000	Flanking Active TSS	HSMM	muscle
36	chr10:94607600-94608000	Flanking Active TSS	K562	blood
37	chr10:94607600-94608000	Flanking Active TSS	Osteobl	bone
38	chr10:94607600-94608200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr10:94607600-94608600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:94607600-94609000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
41	chr10:94607600-94609000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
42	chr10:94607600-94609000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:94607600-94609000	Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr10:94607600-94609000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:94607600-94609000	Active TSS	Brain Hippocampus Middle	brain
46	chr10:94607600-94609000	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr10:94607600-94609200	Active TSS	Brain Anterior Caudate	brain
48	chr10:94607600-94609200	Active TSS	Brain Germinal Matrix	brain
49	chr10:94607600-94609200	Active TSS	Brain Substantia Nigra	brain
50	chr10:94607600-94609200	Active TSS	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links