Variant report

Variant	rs56217539
Chromosome Location	chr11:86641436-86641437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86633156..86635904-chr11:86639940..86642514,2	K562	blood:
2	chr11:86641346..86643236-chr11:86990430..86992858,2	K562	blood:
3	chr11:86639867..86641979-chr11:86651781..86654443,2	K562	blood:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12801184	1.00[ASN][1000 genomes]
rs17758984	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86627600-86642000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:86628000-86643200	Weak transcription	Pancreas	Pancrea
3	chr11:86628000-86643200	Weak transcription	Spleen	Spleen
4	chr11:86630600-86643400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:86633400-86642600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:86634000-86642600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:86635400-86643400	Weak transcription	Right Atrium	heart
8	chr11:86636000-86644000	Weak transcription	Psoas Muscle	Psoas
9	chr11:86636200-86642000	Weak transcription	Lung	lung
10	chr11:86636200-86643000	Weak transcription	Left Ventricle	heart
11	chr11:86636200-86651200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:86636400-86643600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:86636600-86641800	Weak transcription	NHDF-Ad	bronchial
14	chr11:86636600-86641800	Weak transcription	NHLF	lung
15	chr11:86636600-86642000	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:86636600-86643000	Weak transcription	Right Ventricle	heart
17	chr11:86636600-86643200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:86636600-86643400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:86637000-86642000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:86637000-86642800	Weak transcription	Adipose Nuclei	Adipose
21	chr11:86637000-86643000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:86637200-86642800	Weak transcription	Fetal Muscle Leg	muscle
23	chr11:86638400-86641800	Weak transcription	K562	blood
24	chr11:86638400-86642000	Weak transcription	Fetal Kidney	kidney
25	chr11:86638600-86641800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:86638800-86641800	Weak transcription	Ovary	ovary
27	chr11:86638800-86643400	Weak transcription	Aorta	Aorta
28	chr11:86639000-86643200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:86640600-86647200	Enhancers	Fetal Lung	lung
30	chr11:86640600-86652200	Weak transcription	Small Intestine	intestine
31	chr11:86640800-86647200	Enhancers	Fetal Stomach	stomach
32	chr11:86641200-86643200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:86641400-86642200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:86641400-86642400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:86641400-86643400	Enhancers	HUVEC	blood vessel
36	chr11:86641400-86647200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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