Variant report

Variant	rs562183
Chromosome Location	chr11:104765661-104765662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1820471	0.83[AMR][1000 genomes]
rs1820472	0.83[AMR][1000 genomes]
rs4237613	0.83[AMR][1000 genomes]
rs479453	0.83[AMR][1000 genomes]
rs483013	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs489229	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs492215	0.83[AMR][1000 genomes]
rs497116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5000899	1.00[ASN][1000 genomes]
rs507894	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs536992	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs556589	1.00[ASN][1000 genomes]
rs557973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55923694	1.00[ASN][1000 genomes]
rs560339	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56670368	1.00[AMR][1000 genomes]
rs571553	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs576568	1.00[ASN][1000 genomes]
rs601053	0.83[AMR][1000 genomes]
rs601097	0.83[AMR][1000 genomes]
rs602369	0.83[AMR][1000 genomes]
rs604583	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs619368	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs635846	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs648264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs660718	1.00[ASN][1000 genomes]
rs674467	1.00[ASN][1000 genomes]
rs679676	0.83[AMR][1000 genomes]
rs693001	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs693506	1.00[ASN][1000 genomes]
rs73629701	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7928242	1.00[ASN][1000 genomes]
rs7929558	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv826072	chr11:104662708-104768357	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832255	chr11:104674918-104846961	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv2757474	chr11:104719593-104798545	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2759862	chr11:104719593-104798545	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv898355	chr11:104730322-104897843	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv1040536	chr11:104757419-104781022	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	esv20820	chr11:104757749-104781659	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv556217	chr11:104758035-104781313	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv1040784	chr11:104763797-104855878	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104745600-104768600	Weak transcription	Left Ventricle	heart
2	chr11:104752800-104766200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:104754400-104768600	Weak transcription	Pancreas	Pancrea
4	chr11:104759800-104768600	Weak transcription	Lung	lung
5	chr11:104761400-104765800	Enhancers	HUVEC	blood vessel
6	chr11:104762200-104768600	Weak transcription	Psoas Muscle	Psoas
7	chr11:104763800-104769000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:104764000-104766400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:104764200-104766400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:104764200-104768600	Weak transcription	Fetal Lung	lung
11	chr11:104764200-104768800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:104764400-104768400	Weak transcription	NHDF-Ad	bronchial
13	chr11:104764600-104766400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:104764800-104766600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:104764800-104768400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:104764800-104769000	Weak transcription	NHLF	lung
17	chr11:104765000-104765800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr11:104765000-104765800	Enhancers	Colon Smooth Muscle	Colon
19	chr11:104765000-104766000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr11:104765000-104766400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr11:104765000-104767200	Enhancers	Adipose Nuclei	Adipose
22	chr11:104765200-104765800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr11:104765200-104766400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr11:104765200-104766400	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:104765200-104766600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr11:104765200-104767200	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr11:104765400-104765800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:104765400-104767000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:104765400-104767400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:104765600-104765800	Flanking Active TSS	Ovary	ovary
31	chr11:104765600-104766000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:104765600-104767200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:104765600-104769800	Active TSS	Aorta	Aorta

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