Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11769082	0.80[ASN][1000 genomes]
rs11769090	0.80[ASN][1000 genomes]
rs12535207	0.80[ASN][1000 genomes]
rs12537571	0.80[ASN][1000 genomes]
rs1624657	0.80[ASN][1000 genomes]
rs1689296	0.80[ASN][1000 genomes]
rs1689297	0.80[ASN][1000 genomes]
rs1689299	0.80[ASN][1000 genomes]
rs1731306	0.80[ASN][1000 genomes]
rs1731319	0.81[EUR][1000 genomes]
rs1731320	0.80[ASN][1000 genomes]
rs1919940	0.80[ASN][1000 genomes]
rs2164	0.80[ASN][1000 genomes]
rs4947758	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4947759	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693819	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55924429	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6964681	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73113344	0.80[ASN][1000 genomes]
rs7797901	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1017676	chr7:52932139-53350524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831001	chr7:53003534-53152783	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv607008	chr7:53009355-53068819	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
5	nsv888034	chr7:53026365-53611898	Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53023600-53040000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:53030800-53033400	Weak transcription	Ovary	ovary
3	chr7:53030800-53051800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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