Variant report

Variant	rs562200429
Chromosome Location	chr12:58351584-58351585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:58334482..58336747-chr12:58350130..58351915,2	MCF-7	breast:
2	chr12:58331126..58336809-chr12:58347198..58351955,8	K562	blood:
3	chr12:58339593..58341366-chr12:58350590..58353556,2	K562	blood:

Variant related genes	Relation type
ENSG00000166896	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559046	chr12:58162085-58478598	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases
2	nsv523853	chr12:58350631-58386722	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv975500	chr12:58351052-58362673	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58336000-58353000	Weak transcription	Small Intestine	intestine
2	chr12:58336200-58351600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:58336200-58351600	Weak transcription	HUVEC	blood vessel
4	chr12:58336200-58353000	Weak transcription	Stomach Mucosa	stomach
5	chr12:58336200-58353400	Weak transcription	Fetal Kidney	kidney
6	chr12:58336200-58353600	Weak transcription	Brain Substantia Nigra	brain
7	chr12:58336200-58353600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr12:58336200-58353800	Weak transcription	Brain Angular Gyrus	brain
9	chr12:58336200-58353800	Weak transcription	Brain Hippocampus Middle	brain
10	chr12:58336200-58354000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr12:58336200-58354000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr12:58336200-58354000	Weak transcription	Psoas Muscle	Psoas
13	chr12:58336200-58356200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr12:58336200-58359600	Weak transcription	A549	lung
15	chr12:58336400-58359600	Weak transcription	HMEC	breast
16	chr12:58336800-58353000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:58337200-58358400	Weak transcription	HepG2	liver
18	chr12:58339600-58352200	Strong transcription	Primary T cells from cord blood	blood
19	chr12:58340000-58351600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr12:58340600-58351800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr12:58340600-58352200	Strong transcription	Fetal Thymus	thymus
22	chr12:58341000-58352200	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr12:58342800-58352400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr12:58343200-58352600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr12:58343600-58351800	Weak transcription	NHEK	skin
26	chr12:58344600-58352000	Strong transcription	Liver	Liver
27	chr12:58344800-58352000	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr12:58345000-58352600	Strong transcription	Dnd41	blood
29	chr12:58345600-58352000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr12:58346400-58352600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr12:58347800-58352600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr12:58348200-58352400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr12:58348200-58352400	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr12:58348800-58352200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr12:58348800-58353800	Weak transcription	Osteobl	bone
36	chr12:58350000-58351800	Strong transcription	Duodenum Mucosa	Duodenum
37	chr12:58350200-58352200	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr12:58350200-58352600	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr12:58350400-58352600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr12:58350400-58352600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr12:58350400-58352600	Strong transcription	Adipose Nuclei	Adipose
42	chr12:58350600-58351600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr12:58350600-58351800	Strong transcription	Primary B cells from peripheral blood	blood
44	chr12:58350600-58352000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr12:58350600-58352400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
46	chr12:58350600-58352800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr12:58350600-58355400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr12:58350800-58352000	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr12:58350800-58352200	Strong transcription	Stomach Smooth Muscle	stomach
50	chr12:58350800-58352600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links