Variant report

Variant	rs562208949
Chromosome Location	chr5:90487276-90487277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv508369	chr5:90487017-90518540	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90486000-90487600	Enhancers	NHLF	lung
2	chr5:90486200-90487600	Enhancers	Colon Smooth Muscle	Colon
3	chr5:90486200-90487800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:90486400-90487600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:90486400-90487800	Enhancers	NHDF-Ad	bronchial
6	chr5:90486400-90488400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr5:90486400-90489400	Weak transcription	Fetal Intestine Large	intestine
8	chr5:90486400-90490400	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:90486400-90490400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:90486400-90490800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:90486600-90490200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:90486600-90490400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:90486600-90491400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:90486800-90489600	Weak transcription	Fetal Intestine Small	intestine
15	chr5:90486800-90490400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:90487000-90487400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr5:90487000-90488000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr5:90487000-90488000	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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