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Variant report
Variant
rs562215351
Chromosome Location
chr11:59805088-59805089
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:1)
CpG islands (count:0)
Chromatin interactive region (count:3)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
JUND
chr11:59805053-59805222
HepG2
liver:
n/a
n/a
No data
(count:3 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr11:59803708..59805688-chr11:59908661..59910786,2
K562
blood:
2
chr11:59803531..59806483-chr11:59810026..59812914,2
K562
blood:
3
chr11:59803531..59806711-chr11:59810026..59813268,3
K562
blood:
No data
No data
No data
Variant related genes
Relation type
OOSP2
TF binding region
Extended variants information (count: 1 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv832173
chr11:59788884-59940560
Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh
TF binding regionCpG islandChromatin interactive regionlncRNA
10 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links