Variant report

Variant	rs562218560
Chromosome Location	chr6:15590679-15590680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:15590639-15590736	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15589180..15591388-chr6:15596744..15598530,2	MCF-7	breast:
2	chr6:15589654..15592157-chr6:15593605..15596386,2	K562	blood:

Variant related genes	Relation type
DTNBP1	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv970324	chr6:15589492-15593264	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15563400-15604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:15565400-15593200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:15565800-15595800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:15567200-15593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:15571200-15593000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:15574000-15596800	Weak transcription	Fetal Intestine Small	intestine
8	chr6:15574800-15592400	Weak transcription	Dnd41	blood
9	chr6:15574800-15603600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:15575400-15592600	Weak transcription	Primary T cells from cord blood	blood
11	chr6:15576000-15596200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:15578600-15596200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:15578800-15595800	Weak transcription	Aorta	Aorta
14	chr6:15580800-15592200	Weak transcription	Primary B cells from cord blood	blood
15	chr6:15581400-15595800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:15585400-15609800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:15586200-15604600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:15587000-15602600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:15587000-15616200	Weak transcription	Pancreas	Pancrea
20	chr6:15587200-15593800	Weak transcription	Brain Anterior Caudate	brain
21	chr6:15587400-15592200	Weak transcription	Fetal Heart	heart
22	chr6:15587400-15592800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:15587400-15595800	Weak transcription	Ovary	ovary
24	chr6:15587400-15602400	Weak transcription	K562	blood
25	chr6:15587400-15605200	Weak transcription	NHDF-Ad	bronchial
26	chr6:15589600-15595200	Weak transcription	Right Atrium	heart
27	chr6:15589800-15591400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:15589800-15593800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:15589800-15593800	Weak transcription	HSMMtube	muscle
30	chr6:15589800-15595200	Weak transcription	Lung	lung
31	chr6:15589800-15595800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:15589800-15596400	Weak transcription	Left Ventricle	heart
33	chr6:15589800-15596400	Weak transcription	Right Ventricle	heart
34	chr6:15589800-15610000	Weak transcription	GM12878-XiMat	blood
35	chr6:15589800-15614400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:15590000-15608400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:15590200-15593000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:15590400-15610000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:15590600-15596200	Weak transcription	Psoas Muscle	Psoas

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