Variant report

Variant	rs562235865
Chromosome Location	chr8:38913728-38913729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445313	chr8:38886844-38936643	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3325011	chr8:38899844-38936643	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv524818	chr8:38912806-38919407	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38890200-38914400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:38890400-38919800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:38896000-38918400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:38896000-38925000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:38896200-38916000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:38896400-38916400	Weak transcription	K562	blood
7	chr8:38897400-38963400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:38897600-38918600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:38899800-38916600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:38900600-38918400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:38900600-38925600	Weak transcription	Small Intestine	intestine
12	chr8:38902400-38916400	Weak transcription	Right Ventricle	heart
13	chr8:38902400-38920000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:38902400-38947600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:38903000-38921400	Weak transcription	Fetal Heart	heart
16	chr8:38904600-38915200	Weak transcription	Lung	lung
17	chr8:38905000-38913800	Weak transcription	Fetal Brain Male	brain
18	chr8:38905000-38960000	Weak transcription	HSMMtube	muscle
19	chr8:38906000-38922600	Strong transcription	HSMM	muscle
20	chr8:38906800-38915000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr8:38906800-38921400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:38907600-38916600	Strong transcription	NH-A	brain
23	chr8:38908200-38918400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr8:38908400-38915000	Strong transcription	HUVEC	blood vessel
25	chr8:38908800-38915000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr8:38908800-38916200	Weak transcription	Fetal Brain Female	brain
27	chr8:38909000-38922800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:38909200-38913800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr8:38910200-38915800	Strong transcription	HepG2	liver
30	chr8:38910200-38922800	Strong transcription	A549	lung
31	chr8:38910600-38916600	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr8:38910800-38920800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr8:38911000-38923600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:38911200-38916400	Strong transcription	NHLF	lung
35	chr8:38911200-38918600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr8:38911200-38918800	Strong transcription	NHEK	skin
37	chr8:38911200-38921000	Strong transcription	Placenta	Placenta
38	chr8:38911200-38921200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr8:38911200-38922600	Strong transcription	Dnd41	blood
40	chr8:38911200-38923400	Strong transcription	Osteobl	bone
41	chr8:38911400-38914800	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr8:38911400-38916600	Weak transcription	Brain Germinal Matrix	brain
43	chr8:38911400-38917200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr8:38911400-38917800	Strong transcription	HMEC	breast
45	chr8:38911400-38922000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:38911400-38923600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr8:38911600-38913800	Weak transcription	Brain Anterior Caudate	brain
48	chr8:38911600-38913800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr8:38911600-38914000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr8:38911600-38915000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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