Variant report

Variant	rs562252652
Chromosome Location	chr15:41850953-41850954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr15:41849715-41852326	IMR90	lung:	n/a	n/a
2	CTCF	chr15:41850710-41851309	K562	blood:	n/a	chr15:41851122-41851135 chr15:41851159-41851172
3	MAZ	chr15:41850922-41851481	HepG2	liver:	n/a	n/a
4	CCNT2	chr15:41850900-41851648	K562	blood:	n/a	n/a
5	HA-E2F1	chr15:41850909-41852029	Hela-S3	cervix:	n/a	chr15:41851864-41851871 chr15:41851864-41851871 chr15:41851863-41851872 chr15:41851864-41851871 chr15:41851863-41851875
6	SMC3	chr15:41850582-41851297	Hela-S3	cervix:	n/a	n/a
7	ZBTB7A	chr15:41850806-41852117	ECC-1	luminal epithelium:	n/a	chr15:41851756-41851764
8	CTCF	chr15:41850611-41851306	K562	blood:	n/a	chr15:41851122-41851135 chr15:41851159-41851172
9	RAD21	chr15:41850847-41851351	IMR90	lung:	n/a	n/a
10	SIN3A	chr15:41849836-41852455	H1-hESC	embryonic stem cell:	n/a	chr15:41852090-41852104 chr15:41852327-41852340
11	YY1	chr15:41850905-41851790	HepG2	liver:	n/a	n/a
12	MAX	chr15:41850768-41851701	ECC-1	luminal epithelium:	n/a	n/a
13	RAD21	chr15:41850891-41851333	H1-hESC	embryonic stem cell:	n/a	n/a
14	RAD21	chr15:41850951-41851298	SK-N-SH_RA	brain:	n/a	n/a
15	TAF1	chr15:41850582-41851345	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr15:41850658-41851271	K562	blood:	n/a	chr15:41851122-41851135 chr15:41851159-41851172
17	MAZ	chr15:41850641-41852227	Hela-S3	cervix:	n/a	n/a
18	SMARCB1	chr15:41850917-41852367	Hela-S3	cervix:	n/a	n/a
19	SIN3AK20	chr15:41850909-41852015	PANC-1	pancreas:	n/a	n/a
20	MXI1	chr15:41849704-41852502	IMR90	lung:	n/a	chr15:41851314-41851329
21	MXI1	chr15:41849639-41852553	SK-N-SH	brain:	n/a	chr15:41851314-41851329
22	YY1	chr15:41850486-41851040	H1-hESC	embryonic stem cell:	n/a	n/a
23	ZBTB7A	chr15:41850746-41851997	K562	blood:	n/a	chr15:41851756-41851764
24	CTCF	chr15:41849563-41851582	SK-N-SH	brain:	n/a	chr15:41849950-41849966 chr15:41850174-41850192 chr15:41850060-41850073 chr15:41849949-41849962 chr15:41849949-41849967 chr15:41849962-41849975 chr15:41851122-41851135 chr15:41849952-41849965 chr15:41850180-41850189 chr15:41851159-41851172
25	MAX	chr15:41850931-41851935	K562	blood:	n/a	n/a
26	ZNF263	chr15:41850723-41852379	K562	blood:	n/a	chr15:41851388-41851409 chr15:41851348-41851369 chr15:41851896-41851905 chr15:41851160-41851169
27	MAZ	chr15:41850683-41852047	K562	blood:	n/a	n/a
28	RCOR1	chr15:41850587-41851476	K562	blood:	n/a	n/a
29	MAX	chr15:41850899-41852279	HepG2	liver:	n/a	n/a
30	POLR2A	chr15:41850750-41851782	H1-hESC	embryonic stem cell:	n/a	n/a
31	HMGN3	chr15:41850933-41852038	K562	blood:	n/a	n/a
32	POLR2A	chr15:41850929-41851698	HUVEC	blood vessel:	n/a	n/a
33	YY1	chr15:41850891-41851636	K562	blood:	n/a	n/a
34	UBTF	chr15:41850713-41851894	K562	blood:	n/a	n/a
35	RAD21	chr15:41849653-41851660	SK-N-SH	brain:	n/a	chr15:41849962-41849976 chr15:41849953-41849966 chr15:41850172-41850191 chr15:41849961-41849974 chr15:41850059-41850072 chr15:41849955-41849965
36	ZBTB7A	chr15:41850720-41852319	ECC-1	luminal epithelium:	n/a	chr15:41851756-41851764
37	CTCF	chr15:41849726-41851378	A549	lung:	n/a	chr15:41849950-41849966 chr15:41850174-41850192 chr15:41850060-41850073 chr15:41849949-41849962 chr15:41849949-41849967 chr15:41849962-41849975 chr15:41851122-41851135 chr15:41849952-41849965 chr15:41850180-41850189 chr15:41851159-41851172
38	UBTF	chr15:41850747-41851951	K562	blood:	n/a	n/a
39	RCOR1	chr15:41850574-41851152	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:41850304..41852496-chr15:41951450..41954168,2	MCF-7	breast:
2	chr15:41849860..41852803-chr15:41858013..41860929,2	MCF-7	breast:
3	chr15:41847317..41853712-chr15:41951201..41955578,8	K562	blood:
4	chr15:41834571..41836708-chr15:41849262..41851156,2	K562	blood:
5	chr15:41849459..41853162-chr15:41854225..41857161,4	MCF-7	breast:
6	chr15:41784400..41789772-chr15:41847283..41854059,7	K562	blood:
7	chr15:41849370..41852913-chr15:41951069..41953769,6	K562	blood:
8	chr15:41850576..41853126-chr15:41900769..41903357,2	K562	blood:

Variant related genes	Relation type
TYRO3	TF binding region
ENSG00000103932	Chromatin interaction
ENSG00000137825	Chromatin interaction
ENSG00000174197	Chromatin interaction
ENSG00000260926	Chromatin interaction
ENSG00000092445	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3379660	chr15:41850410-41852608	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41849800-41851000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:41849800-41851000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr15:41850000-41851000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:41850000-41851000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:41850000-41851000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:41850000-41851000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:41850000-41851000	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr15:41850000-41851000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr15:41850000-41851000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr15:41850000-41851000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:41850000-41851000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr15:41850000-41851000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:41850000-41851000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr15:41850000-41851000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr15:41850000-41851000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:41850000-41851000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:41850000-41851000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr15:41850000-41851000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:41850000-41851000	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr15:41850000-41851000	Flanking Active TSS	Brain Hippocampus Middle	brain
21	chr15:41850000-41851000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
22	chr15:41850000-41851000	Flanking Active TSS	Fetal Lung	lung
23	chr15:41850000-41851000	Enhancers	Gastric	stomach
24	chr15:41850000-41851000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr15:41850000-41851000	Enhancers	Small Intestine	intestine
26	chr15:41850000-41851000	Enhancers	Stomach Mucosa	stomach
27	chr15:41850000-41851000	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr15:41850000-41851000	Enhancers	Spleen	Spleen
29	chr15:41850000-41851000	Flanking Active TSS	Dnd41	blood
30	chr15:41850000-41851000	Flanking Active TSS	Hela-S3	cervix
31	chr15:41850000-41852200	Enhancers	Liver	Liver
32	chr15:41850000-41853000	Enhancers	Fetal Heart	heart
33	chr15:41850200-41851000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr15:41850200-41851000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr15:41850200-41851000	Flanking Active TSS	Osteobl	bone
36	chr15:41850200-41852200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:41850200-41852600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr15:41850200-41852600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:41850200-41853200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:41850400-41851000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:41850400-41851000	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr15:41850400-41851000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:41850400-41851000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:41850400-41851000	Flanking Active TSS	HMEC	breast
45	chr15:41850400-41851000	Flanking Active TSS	NH-A	brain
46	chr15:41850400-41852200	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr15:41850600-41851000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
48	chr15:41850600-41851000	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
49	chr15:41850600-41851000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
50	chr15:41850600-41851000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links