Variant report

Variant	rs562264982
Chromosome Location	chr7:69507940-69507941
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:69396739..69397519-chr7:69507195..69508169,2	MCF-7	breast:
2	chr7:69507502..69508119-chr7:69626360..69626921,2	MCF-7	breast:
3	chr7:69507259..69508393-chr7:70162935..70163782,5	MCF-7	breast:
4	chr7:69507240..69508178-chr7:69626181..69627189,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1034281	chr7:69403828-69548378	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538923	chr7:69403828-69548378	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1034182	chr7:69406172-69529294	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538924	chr7:69406172-69529294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv607429	chr7:69430748-69553093	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1028705	chr7:69453983-69524628	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1022932	chr7:69496659-69564369	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv538925	chr7:69496659-69564369	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv1034817	chr7:69507871-69578892	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv538926	chr7:69507871-69578892	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69493400-69508000	Weak transcription	Fetal Brain Male	brain
2	chr7:69496400-69509600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:69504800-69508400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:69505000-69508600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:69505400-69509400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr7:69505600-69510000	Enhancers	Fetal Intestine Small	intestine
7	chr7:69505600-69510200	Enhancers	Fetal Intestine Large	intestine
8	chr7:69505800-69508600	Weak transcription	Left Ventricle	heart
9	chr7:69505800-69513200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:69506000-69509200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:69506200-69512400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:69507000-69508200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:69507000-69508400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:69507200-69508400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:69507200-69512800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:69507400-69508000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr7:69507400-69508000	Enhancers	Colon Smooth Muscle	Colon
18	chr7:69507400-69508000	Enhancers	HSMM	muscle
19	chr7:69507400-69508400	Enhancers	Fetal Lung	lung
20	chr7:69507400-69510200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr7:69507600-69508000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:69507600-69508000	Enhancers	Brain Hippocampus Middle	brain
23	chr7:69507600-69508000	Enhancers	Fetal Brain Female	brain
24	chr7:69507600-69508000	Enhancers	Fetal Kidney	kidney
25	chr7:69507600-69508000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr7:69507600-69508000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr7:69507600-69508000	Enhancers	HSMMtube	muscle
28	chr7:69507600-69508000	Enhancers	NH-A	brain
29	chr7:69507600-69508000	Enhancers	NHDF-Ad	bronchial
30	chr7:69507600-69508000	Enhancers	Osteobl	bone
31	chr7:69507600-69508400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:69507600-69508400	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr7:69507600-69509000	Enhancers	Fetal Heart	heart
34	chr7:69507600-69509200	Enhancers	Adipose Nuclei	Adipose
35	chr7:69507600-69509200	Enhancers	Fetal Muscle Leg	muscle
36	chr7:69507600-69509200	Enhancers	Small Intestine	intestine
37	chr7:69507600-69509400	Enhancers	Fetal Stomach	stomach
38	chr7:69507800-69508800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr7:69507800-69508800	Weak transcription	Right Atrium	heart

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