Variant report

Variant	rs56227728
Chromosome Location	chr3:59493117-59493118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11708862	0.85[ASN][1000 genomes]
rs11716806	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11720835	0.83[ASN][1000 genomes]
rs11916409	0.89[ASN][1000 genomes]
rs11924123	0.89[ASN][1000 genomes]
rs12629410	0.88[ASN][1000 genomes]
rs12634753	0.88[ASN][1000 genomes]
rs1394596	0.82[ASN][1000 genomes]
rs1394597	0.81[ASN][1000 genomes]
rs28606076	0.88[ASN][1000 genomes]
rs4679582	0.82[ASN][1000 genomes]
rs4679583	0.83[ASN][1000 genomes]
rs55914841	0.89[ASN][1000 genomes]
rs56218373	0.89[ASN][1000 genomes]
rs62250695	0.82[ASN][1000 genomes]
rs7340589	0.88[ASN][1000 genomes]
rs7340623	0.89[ASN][1000 genomes]
rs7340628	0.89[ASN][1000 genomes]
rs9852282	0.81[ASN][1000 genomes]
rs9866013	0.82[ASN][1000 genomes]
rs9883594	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011181	chr3:58665373-59542339	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv536574	chr3:58665373-59542339	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv998676	chr3:59485915-59519363	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2149596	chr3:59492886-59493347	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3464206	chr3:59492988-59493262	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3464207	chr3:59493062-59493182	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59492400-59501000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:59492600-59496400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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