Variant report

Variant	rs562294721
Chromosome Location	chr5:124377400-124377401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124373569..124376371-chr5:124376521..124378624,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv4984	chr5:124377028-124401500	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124363400-124377600	Weak transcription	Fetal Kidney	kidney
2	chr5:124365400-124379400	Weak transcription	Pancreas	Pancrea
3	chr5:124370600-124377400	Weak transcription	Stomach Mucosa	stomach
4	chr5:124371600-124379600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:124374400-124379200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:124375000-124377400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:124375000-124379600	Weak transcription	Fetal Thymus	thymus
8	chr5:124376400-124378800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:124376600-124377800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:124376600-124378000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:124376600-124378400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:124376600-124378800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:124376600-124379000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:124376600-124382800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:124376800-124377600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:124376800-124378000	Enhancers	Dnd41	blood
17	chr5:124376800-124378600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:124377200-124378200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:124377200-124378600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:124377200-124379000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:124377200-124380600	Enhancers	Adipose Nuclei	Adipose
22	chr5:124377200-124380600	Enhancers	Fetal Lung	lung
23	chr5:124377400-124378000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr5:124377400-124378000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:124377400-124378200	Enhancers	Stomach Mucosa	stomach
26	chr5:124377400-124378600	Enhancers	Fetal Heart	heart
27	chr5:124377400-124379000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr5:124377400-124379400	Enhancers	A549	lung
29	chr5:124377400-124380600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr5:124377400-124381000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr5:124377400-124381200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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