Variant report

Variant	rs562298900
Chromosome Location	chr11:74642462-74642463
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74640923..74643300-chr11:74745536..74747928,2	K562	blood:
2	chr11:74640377..74642514-chr11:74652092..74654099,2	K562	blood:
3	chr11:74640134..74643076-chr11:74654287..74656297,2	MCF-7	breast:
4	chr11:74631923..74634121-chr11:74641011..74642519,2	K562	blood:
5	chr11:74641794..74643776-chr11:74964024..74966770,2	K562	blood:
6	chr11:74642326..74645440-chr11:74646837..74649295,3	K562	blood:
7	chr11:74641314..74643674-chr11:74698479..74700566,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166435	Chromatin interaction
ENSG00000162139	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3346818	chr11:74642445-74642638	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74594800-74646600	Weak transcription	Small Intestine	intestine
2	chr11:74615800-74644800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:74616400-74646000	Weak transcription	Spleen	Spleen
4	chr11:74616400-74656200	Weak transcription	Stomach Mucosa	stomach
5	chr11:74617400-74648200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:74618000-74659600	Weak transcription	Esophagus	oesophagus
7	chr11:74618400-74653800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:74620000-74646200	Weak transcription	Right Ventricle	heart
9	chr11:74620400-74659600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:74624200-74643200	Weak transcription	HSMMtube	muscle
11	chr11:74627800-74659200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:74628200-74659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:74630000-74643400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:74630000-74645200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:74630000-74646000	Weak transcription	Aorta	Aorta
16	chr11:74630200-74643400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:74630400-74644600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:74630800-74646000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:74630800-74659000	Weak transcription	Fetal Brain Male	brain
20	chr11:74631000-74646000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr11:74631600-74659000	Weak transcription	Hela-S3	cervix
22	chr11:74632200-74643400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:74632200-74644000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:74632200-74646000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:74632200-74659600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:74632400-74643200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:74632400-74643400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:74632400-74643400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:74632400-74643600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:74632400-74644200	Weak transcription	Fetal Thymus	thymus
31	chr11:74632400-74644800	Weak transcription	Fetal Brain Female	brain
32	chr11:74632400-74645600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:74632400-74646000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:74632400-74646000	Weak transcription	Brain Germinal Matrix	brain
35	chr11:74632400-74647200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:74632400-74647200	Weak transcription	Lung	lung
37	chr11:74632400-74648400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:74632600-74644400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:74633000-74643400	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:74633000-74643400	Weak transcription	Fetal Kidney	kidney
41	chr11:74633000-74643400	Weak transcription	Ovary	ovary
42	chr11:74633000-74643800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:74633000-74645600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:74633000-74659400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr11:74634200-74646200	Weak transcription	Gastric	stomach
46	chr11:74634400-74646600	Weak transcription	Psoas Muscle	Psoas
47	chr11:74634600-74642800	Weak transcription	Adipose Nuclei	Adipose
48	chr11:74634600-74643400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:74634600-74643400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:74634800-74644000	Weak transcription	Primary B cells from cord blood	blood

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