Variant report
| Variant | rs56231343 |
|---|---|
| Chromosome Location | chr12:121073842-121073843 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000256008 | Chromatin interaction |
| ENSG00000157782 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs2138250 | 1.00[AFR][1000 genomes] |
| rs55645249 | 1.00[AFR][1000 genomes] |
| rs55874815 | 0.98[EUR][1000 genomes] |
| rs55980956 | 1.00[AFR][1000 genomes] |
| rs56175661 | 0.83[AFR][1000 genomes] |
| rs56178989 | 1.00[AFR][1000 genomes] |
| rs56183824 | 1.00[AFR][1000 genomes] |
| rs56366632 | 1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs56391085 | 0.83[AFR][1000 genomes] |
| rs73213106 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73222778 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73222784 | 1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73222786 | 1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73222787 | 1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73225003 | 1.00[AFR][1000 genomes] |
| rs73225093 | 1.00[AFR][1000 genomes] |
| rs73227016 | 1.00[AFR][1000 genomes] |
| rs73227026 | 1.00[AFR][1000 genomes] |
| rs73227027 | 0.83[AFR][1000 genomes] |
| rs73227029 | 0.83[AFR][1000 genomes] |
| rs73227036 | 0.83[AFR][1000 genomes] |
| rs73227038 | 1.00[AFR][1000 genomes] |
| rs73229118 | 1.00[AFR][1000 genomes] |
| rs73229126 | 1.00[AFR][1000 genomes] |
| rs73229149 | 1.00[AFR][1000 genomes] |
| rs73229157 | 1.00[AFR][1000 genomes] |
| rs73229160 | 1.00[AFR][1000 genomes] |
| rs73230347 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs73230349 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs73230352 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv521928 | chr12:121041728-121761800 | Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 68 gene(s) | inside rSNPs | diseases |
| 2 | nsv899557 | chr12:121069201-121189116 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 3 | nsv1037070 | chr12:121069938-121459047 | Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
