Variant report

Variant	rs56232028
Chromosome Location	chr14:69247948-69247949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69171540..69174510-chr14:69246055..69248533,2	MCF-7	breast:
2	chr14:69247911..69250643-chr14:69303141..69305926,2	MCF-7	breast:
3	chr14:69239634..69241478-chr14:69247451..69250046,2	K562	blood:
4	chr14:69124488..69126263-chr14:69245986..69248780,2	MCF-7	breast:
5	chr14:69236522..69239167-chr14:69246700..69248394,2	K562	blood:
6	chr14:68823758..68825352-chr14:69246991..69249510,2	MCF-7	breast:
7	chr14:69230966..69233869-chr14:69245224..69248622,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12147199	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12148044	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17757282	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2164627	0.80[EUR][1000 genomes]
rs55814645	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56020080	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56082161	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56095181	0.88[EUR][1000 genomes]
rs56119720	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58638884	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59525232	0.95[AFR][1000 genomes]
rs60594327	0.95[AFR][1000 genomes]
rs72731526	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72731527	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72731529	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72731531	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72731532	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72731534	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72731535	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731537	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72731538	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72731539	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72731544	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72731547	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72731549	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72731550	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72731551	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72731554	0.85[EUR][1000 genomes]
rs73279125	0.95[AFR][1000 genomes]
rs73279127	0.96[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73279130	0.96[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs735292	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8013475	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69240400-69248600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:69244200-69249600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:69244400-69248600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:69244400-69248600	Enhancers	HSMMtube	muscle
5	chr14:69244400-69248600	Enhancers	NHLF	lung
6	chr14:69244400-69252200	Enhancers	Fetal Intestine Small	intestine
7	chr14:69244400-69253200	Enhancers	Fetal Intestine Large	intestine
8	chr14:69244400-69253600	Enhancers	Stomach Mucosa	stomach
9	chr14:69244600-69249600	Enhancers	Fetal Heart	heart
10	chr14:69244600-69250000	Enhancers	Fetal Lung	lung
11	chr14:69244800-69249400	Enhancers	Colon Smooth Muscle	Colon
12	chr14:69245000-69249000	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr14:69245000-69249600	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr14:69245000-69249800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr14:69245200-69250200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr14:69245400-69249400	Enhancers	HUVEC	blood vessel
17	chr14:69245600-69248400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:69245600-69248400	Enhancers	Psoas Muscle	Psoas
19	chr14:69245600-69248400	Enhancers	HMEC	breast
20	chr14:69245600-69250200	Enhancers	Pancreas	Pancrea
21	chr14:69245600-69253200	Enhancers	Fetal Thymus	thymus
22	chr14:69245800-69248400	Enhancers	Brain Anterior Caudate	brain
23	chr14:69245800-69248600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr14:69245800-69249000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:69245800-69249200	Enhancers	Right Ventricle	heart
26	chr14:69245800-69249600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:69245800-69249600	Enhancers	Left Ventricle	heart
28	chr14:69245800-69249600	Enhancers	Lung	lung
29	chr14:69245800-69249800	Enhancers	Placenta	Placenta
30	chr14:69246000-69248200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:69246000-69248200	Weak transcription	Ovary	ovary
32	chr14:69246000-69248600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr14:69246000-69248800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr14:69246000-69249400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:69246000-69249600	Enhancers	Small Intestine	intestine
36	chr14:69246200-69248400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:69246200-69248400	Enhancers	Placenta Amnion	Placenta Amnion
38	chr14:69246200-69248600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr14:69246200-69249400	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr14:69246200-69249400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:69246200-69249600	Enhancers	Fetal Muscle Leg	muscle
42	chr14:69246200-69250000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
43	chr14:69246400-69248000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
44	chr14:69246400-69248000	Flanking Active TSS	Thymus	Thymus
45	chr14:69246400-69248600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr14:69246400-69248800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr14:69246400-69248800	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr14:69246400-69248800	Enhancers	NHEK	skin
49	chr14:69246400-69249000	Enhancers	Fetal Kidney	kidney
50	chr14:69246400-69249200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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