Variant report

Variant	rs562324638
Chromosome Location	chr10:6639702-6639703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6637758..6639916-chr10:6710958..6712472,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv3463841	chr10:6639004-6641664	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3463952	chr10:6639056-6641634	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3464174	chr10:6639069-6641622	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3464063	chr10:6639075-6641594	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3464286	chr10:6639127-6641558	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3464397	chr10:6639141-6641556	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv15693	chr10:6639150-6641560	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv516026	chr10:6639501-6639986	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6626200-6643400	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:6626200-6645200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:6628000-6644600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:6628800-6644600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:6631200-6644800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr10:6632000-6645000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:6632000-6645200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:6633400-6645000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:6634600-6642200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr10:6635400-6641400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:6635400-6642200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:6635600-6640800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:6635600-6641600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:6635800-6642000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:6636600-6642200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:6636600-6645400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:6636600-6648200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:6636800-6642000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:6636800-6644600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:6637800-6642000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:6637800-6642000	Weak transcription	Fetal Thymus	thymus
22	chr10:6637800-6642000	Weak transcription	Thymus	Thymus
23	chr10:6637800-6642200	Weak transcription	Brain Substantia Nigra	brain
24	chr10:6637800-6643600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:6638000-6642200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr10:6638000-6643600	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:6638000-6644600	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr10:6638200-6642200	Enhancers	Primary T cells from cord blood	blood
29	chr10:6639000-6642200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:6639200-6639800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr10:6639200-6640000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:6639400-6640800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr10:6639400-6640800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:6639600-6640000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr10:6639600-6641600	Genic enhancers	Primary T helper cells PMA-I stimulated	--

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